Query= MSMg01no143_j10.b1 MSMg01no143_j10.b1 CHROMAT_FILE:
MSMg01no143_j10.b1 PHD_FILE: MSMg01no143_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:11 2005
(334 letters)
>mm_chr5_44250011_44250744
Length = 734
Score = 505 bits (261), Expect = e-147
Identities = 271/275 (98%), Gaps = 2/275 (0%)
Strand = Plus / Plus
Query: 1 ttgtccttcagcctcttggtgttgaatgtaagaatggaaagcataaatatccctagaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtccttcagcctcttggtgttgaatgtaagaatggaaagcataaatatccctagaagt 260
Query: 61 gaagtaaacatcttataagatctgttgaaaggaaatggcatatgttggtattctcggttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtaaacatcttataagatctgttgaaaggaaatggcatatgttggtattctcggttg 320
Query: 121 attggcaatgcatgtatagaatagctaatgtgcagagttagtacttgggcaataaagggg 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggcaatgcatgtatagagtagctaatgtgcagagttagtacttgggcaataaagggg 380
Query: 181 ttaatttgactaaatcagtgagtactgagcactaaatcagtgagcactgagcactaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatttgactaaatcagtgagtactgagcactaaatcagtgagcactgagcactaaatc 440
Query: 241 agtgagcactgatcactaaatcagtgag--cactg 273
|||||||||||| ||||||||||||||| |||||
Sbjct: 441 agtgagcactgagcactaaatcagtgagtacactg 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_j10.g1 MSMg01no143_j10.g1 CHROMAT_FILE:
MSMg01no143_j10.g1 PHD_FILE: MSMg01no143_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:11 2005
(237 letters)
>mm_chr5_44390253_44390887
Length = 635
Score = 375 bits (194), Expect = e-108
Identities = 220/236 (93%), Gaps = 13/236 (5%)
Strand = Plus / Minus
Query: 1 ttcagagtttcccaccctaatcacttccccaaagcatgtaccgccaccccacccccgccc 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 487 ttcagagtttcccaccctaatcacttccccaaagcatgtaccaccaccccacc------- 435
Query: 61 ccatccagaatcttttttgatgaatttggaattgtgtagatgcacaggtcggggcatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ----ccagaatcttttttgatgaatttggaattgtgtagatgcacaggtcggggcatctg 379
Query: 121 atgatgccggggaggggcagtaaggttctgaagtgagggataaagacctttttttttttc 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 378 atgatgccggggaggggcagtaaggttctgaagtgagggataaagacc--ttttttttcc 321
Query: 181 tgataatttgctgaacttgggtaccagagtgctgtgttgtggggtcgcttcagggc 236
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgataatttcctgaacttgggtaccagagtgctgtgttgtggggtcgcttcagggc 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 635
Length adjustment: 9
Effective length of query: 228
Effective length of database: 626
Effective search space: 142728
Effective search space used: 142728
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
