BAC Information

Click to search

BAC

Clone NameMSMg01-144C08
Chromosome5 (Build37)
Map Location 70,425,004 - 70,425,371
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144C08.T7 (MSMg01no144_c08.b1)MSMg01-144C08.TJ (MSMg01no144_c08.g1)
ACCAG348296AG348297
length837727
length of high quality
(start - end)
65 (71 - 135)368 (77 - 444)
definitionCHROMAT_FILE: MSMg01no144_c08.b1 PHD_FILE: MSMg01no144_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:53 2005CHROMAT_FILE: MSMg01no144_c08.g1 PHD_FILE: MSMg01no144_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAAATCCGCGNAA
TTCTTTGGTTCTCTCCGANCCCCATTTTTTAATGGNATTATTTGATTTTC
TGGAGTCCACCTTTTTGNACTCTTCATATATATTGCATATACTCCTCTAT
CTGATTAATACCCAACGANAAACCAACCTTTCCCACACCCTCTTTCTTCC
CCTTTCCCCCCCTATGACCGCTTTGCTACAAACTTGCCTTCATGAGCAAT
TTGCATTCCATTTAACACACCATGTGTCATCANGAATTTCCCTGTGCCTT
CTCAGCTTTCCCACTTCCCTCAAATTCANGCCCGCCTACGTGACCCTTGT
TCCTATTTTGCCCCCCCCAGACAATACCGATCCTTCCATTCTCTCTATAC
CCCCTCTCCTCCCCCCCCCTGAAAAGTTTCTTTCCGANCCCTCCCTCTAA
CAATCTTTTTTTTTGTTTTTTCACCCCCCCCNCCCNNCCTNNNNNCCCGG
CCCTCGTGGTGTGAGGCTCCCCCNNNNNNTNNTTTTTTTTTTTCNNNNTC
CCCTTTATTTGGGGGGGTCCCCCTCTCTTTNCNCCCCCNCCCCCCNCCCT
CTTACCTTTTTCTTTTTTTGCGGAGGAGATTCTTTNTCCCCCTTCCCCCC
CCNTCCCCCTTTCCTTTCCCCTCGCTTTGTGTTGGTGTGTTTTCCTTTTT
TTTCCCCTCCCCTTTTTTCTTTCCCTTCCTTCTCCCCCCTTTATNTTTAT
TACTCCCTTTCTTTTTTCGCCGTTTTTTTGTGTTTTTCCCCNCCCCNTNA
CCCCTTCTTCCCTCTCCTCTTTTTTCTTTTTTTTTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTACAGGTAGAAATTTATATATA
TGAAAAAGAAAATGAAGACTTAGAGAAACCCTGCATGTGGGTACTACCAC
CTAATGGGCTGAGGGTCCAGATAAAATCAGGAGGAGGCGGCAGGGCAAGT
GAAGAAGAAAGGAATATTCTCACTTACTATGTATGTATGCTGGTTGATGT
GAGGTAAGAAAAGTTTCTCACCCATATCTGTCCATCAAATTACTTCTGCC
TTGCCATAATCCAAGACAATGAAACTCCTTAATCATGAACTTTCCTGAGA
TAAATGTTTTCTTCATGCACACAGTTTATTTCAGATCATGTTGTAAAAAT
CTATTTTATGCATATTATCCACCTCTACTATTTCTCTTATGTGTTACCAC
TATGTCACAGACGAGAAACTACGTCTTATCGAATATTAGGTAAGACAAAT
AGGATAAGTTCTCATTCGCATGGATGCTTTTCAAGGCTCCCCTATTTCTT
ATTCGTTATATACATATATATCAGTTTATATTTCTGACCAAAAATTCCAT
GAAAGATGGGTTTTCTACTGACTCCAACATAAGAAGTACTCTGCTAACGT
TTTACCCATATTTCATACCTCATTATGTAACATGTAATCACCGCCAGGCA
ATGGTAAATTCCATATGTCACCTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_c08.g1 MSMg01no144_c08.g1 CHROMAT_FILE:
MSMg01no144_c08.g1 PHD_FILE: MSMg01no144_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:53 2005
         (368 letters)



>mm_chr5_70424804_70425571
          Length = 768

 Score =  673 bits (348), Expect = 0.0
 Identities = 363/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacaggtagaaatttatatatatgaaaaagaaaatgaagacttagagaaaccctgcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tctacaggtagaaatttatatatatgaaaaagaaaatgaagacttagataaaccctgcat 260

                                                                       
Query: 61  gtgggtactaccacctaatgggctgagggtccagataaaatcaggaggaggcggcagggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggtactaccacctaatgggctgagggtccagataaaatcaggaggaggcggcagggc 320

                                                                       
Query: 121 aagtgaagaagaaaggaatattctcacttactatgtatgtatgctggttgatgtgaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgaagaagaaaggaatattctcacttactatgtatgtatgctggttgatgtgaggta 380

                                                                       
Query: 181 agaaaagtttctcacccatatctgtccatcaaattacttctgccttgccataatccaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaagtttctcacccatatctgtccatcaaattacttctgccttgccataatccaaga 440

                                                                       
Query: 241 caatgaaactccttaatcatgaactttcctgagataaatgttttcttcatgcacacagtt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatgaaactccctaatcatgaactttcctgagataaatgttttcttcatgcacacagtt 500

                                                                       
Query: 301 tatttcagatcatgttgtaaaaatctattttatgcatattatccacctctactatttctc 360
           ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||
Sbjct: 501 tatttcagatcatgttgtaaaaatctattttatgcatattatttatctctactatttctc 560

                   
Query: 361 ttatgtgt 368
           ||||||||
Sbjct: 561 ttatgtgt 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)