BAC Information

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BAC

Clone NameMSMg01-144F05
Chromosome5 (Build37)
Map Location 122,714,742 - 122,715,148
singlet/doubletsinglet
Overlap genenone
Upstream geneAU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1
Downstream genePptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144F05.T7 (MSMg01no144_f05.b1)MSMg01-144F05.TJ (MSMg01no144_f05.g1)
ACCAG348426AG348427
length711723
length of high quality
(start - end)
267 (333 - 599)405 (79 - 483)
definitionCHROMAT_FILE: MSMg01no144_f05.b1 PHD_FILE: MSMg01no144_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:07 2005CHROMAT_FILE: MSMg01no144_f05.g1 PHD_FILE: MSMg01no144_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCGTTCCAGGCCATTCCATTCCCTTCCTGGCATCCATGGGC
CCTGCATGCACATGGTACTGAAGGAAAATGAGATTTTGTAACTTGTGATT
CATGTAAAAGAGTTGTCTATGAGCCCGTGGCCTGGGGCCGAGAACAAAGC
AGAACAGACAGGGCTGTTGTTAAGACATTCCTAAGAACAGCTAGATTGTA
CAAGCAGGGCTATCTTGTCTGGGTCAACACCACCTGGCCGGAACCTCCCC
TCTGTCTACTGCCCCTTGACGCTGGGTAAAGTCATACATCAACTGGTTGC
TATGTGAACAAAGATAAGCCCCCAGCCCATGGGAACAAAGTCCTGATGCC
ATTTTGCTGACATGTAATCTTTCCCCCAATGTTTGAATAAGCCAATAGTG
TGTCGCTATGCTGAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACC
CCTAGCTTCTGAGCCTCATGGTCGAATCCACTGTCTCCTGCGTGAGATAC
GTTTCGACCCGGAACTCCGCCATTAAACTACCTCGTGTTTTTACATCAAG
GCGTTTGCGTTCTGTTTGTGATTCTTGGGTGCACTCCGAATTCGCAGTTG
AGTGCGAGTTTCCCCTATATGTTCTCTTAGTACCACACCGGTCTACCACT
CTCTCTGATTG
NCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGTCATTCAAGACTAGGGCAG
AGCCTAGAAGAGAGTATTTCTAATAAAAGACCCGCAGCGCATGTTTAGAA
GCGACTTGGTTCCTTTAAGTTACATTGCCACGATCCTTGTTACCCCATGT
CACACTTTCTTTGCCTTTGGATACATCGCAGGAGGTCGCCAGAGCACTTC
TATCCACGGATTTATTTATGATAAGAGAAACAAAAGAATTCTTAACTTTT
TGATTCTTTTAGACGGGATCTCTCTGTGCCTGACTAATCTCGAACCCAAG
GCAGCCCTATGTCAGTGCCTCATGCCAGGCATGCACCACCGCATCCAATC
TCCATATCTGCCTTTATGACCACATCATTTGGAATGTTCTTCTCGTCGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTACTGGGAGGGGGAGG
ATGTNTTACCCTCCCTTGTTCTCTTATTCTCCATTTCTCCCTTGCTCTTC
GCTTTTACACTGTCTTTTTCATTCATCCTCTGTTTTTCTCTTCTCCTCCT
CTTTTTTCGTCTCCCTTCTCTACATTTCTTCATTTTCCCTTTCTTCCCTC
CCCTCTTTCTACTGTACTCCCCTCTTTTTCCCTACCCCCTTTTACCCCCC
TTTTTCCCTTCCTCTCTCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_f05.g1 MSMg01no144_f05.g1 CHROMAT_FILE:
MSMg01no144_f05.g1 PHD_FILE: MSMg01no144_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:07 2005
         (405 letters)



>mm_chr5_122714545_122715349
          Length = 805

 Score =  644 bits (333), Expect = 0.0
 Identities = 388/413 (93%), Gaps = 15/413 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtcattcaagactagggcagagcctagaagagagtatttctaataaaagacccgcagc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gagtcagtcaagactagggcagagcctagaagagagtatttctaataaaagacccgcagc 257

                                                                       
Query: 61  gcatgtttagaagcgacttggttcctttaagttacattgccacgatccttgttaccccat 120
           ||||||||||||| |||||||||||||||||||||||||  |  ||  || |||||||||
Sbjct: 258 gcatgtttagaagtgacttggttcctttaagttacattg--a--at--ttcttaccccat 311

                                                                       
Query: 121 gt--cac-------actttctttgcctttggatacatcgcaggaggtcgccagagcactt 171
           ||  |||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtaacactttctttactttctttgcctttggatacatcgcaggaggtcgccagagcactt 371

                                                                       
Query: 172 ctatccacggatttatttatgataagagaaacaaaagaattcttaactttttgattcttt 231
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 372 ctgtccacggatttatttatgataagagaaacaaaagaattcttaactttttggttcttt 431

                                                                       
Query: 232 tagacgggatctctctgtgcctgactaatctcgaacccaaggcagccctatgtcagtgcc 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tagacgggatctctctgtgcctgactaatctcgaacccaaggcagccctatgtcagtgcc 491

                                                                       
Query: 292 tcatgccaggcatgcaccaccgcatccaatctccatatctgcctttatgaccacatcatt 351
           ||||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||
Sbjct: 492 tcatgccaggcatgcaccaccgcatccaacctccatatctgcctttatgattatatcatt 551

                                                                
Query: 352 tggaatgttcttctcgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 404
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 552 tggaatgttcttctcatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)