Query= MSMg01no144_i14.b1 MSMg01no144_i14.b1 CHROMAT_FILE:
MSMg01no144_i14.b1 PHD_FILE: MSMg01no144_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:23 2005
(286 letters)
>mm_chr5_70894200_70894885
Length = 686
Score = 485 bits (251), Expect = e-141
Identities = 275/283 (97%)
Strand = Plus / Plus
Query: 1 gacctaaattagatccctaaagccacaacggatggactccaacaagttgtcctatgattt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gacctaaattagatccctaaagccacaacagatggactccaacaagttgtcctatgattt 260
Query: 61 ttacaaacacactgtatcatgtatatgtcctgaaaaacaccaaacaacacaaacaacaaa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacaaacacactgtagcatgtatatgtcctgaaaaacaccaaacaacacaaacaacaaa 320
Query: 121 gcaataaacaaacaaatatgtaagtaataagaaatcattactaggtgaaaagggaaaccc 180
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gcaataaacaagcaaatatgtaagtaataggaaatcattactaggtgaaaagggaaaccc 380
Query: 181 atagaatgggaacatagctttgctagctatacatctaataaaggattgatatctgttgtc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagaatggggacatagctttgctagctatacatctaataaaggattgatatctgttgtc 440
Query: 241 caaagtatacaaaatactcaatgtttcaaaaacttacccatca 283
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 caaagtatacaaaatactcaatgtttcaaaaacttagccatca 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no144_i14.g1 MSMg01no144_i14.g1 CHROMAT_FILE:
MSMg01no144_i14.g1 PHD_FILE: MSMg01no144_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:24 2005
(629 letters)
>mm_chr5_71070221_71071245
Length = 1025
Score = 1096 bits (567), Expect = 0.0
Identities = 613/629 (97%), Gaps = 4/629 (0%)
Strand = Plus / Minus
Query: 1 tttaaggtaagtctgaaacaacttctaatgaattcatattctagaattagtcaaactggt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 825 tttaaggtaagtctgaaacaacttctaatgaatttatattctagaattagtcaaactggt 766
Query: 61 agctcagttaaagctcacagaggcaaaagacattgacagttatttaaacacaatattgct 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 765 agctcagttaaagctcacagaggcaaaagacactgacagttatttaaacacaatattgct 706
Query: 121 agttccatctgaatttcacaggagcaagggtatcctggcgacagtaattttactaagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agttccatctgaatttcacaggagcaagggtatcctggcgacagtaattttactaagagc 646
Query: 181 tgaagacctgaacaggcaaacctgtgaaaccctactcaaggtcaaagatacttcattttt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 645 tgaagacctgaacaggcaaacctgtgaaaccctactcaaggtcaaagataattcattttt 586
Query: 241 ctctgcagatgatcgaataaaagcaaaatttttggaatggaatatagaacatttcacatt 300
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 585 ctctgcagatgattgaataaaagcaaaatttttggattggaatatagaacatttcaca-t 527
Query: 301 tggggggggtgggtgacaccaaaggtgagatgatttatcttgccatttcatgcattagca 360
|||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 526 tggggggg--ggg-gacgccaaaggtaagatgatttatcttgccatttcatgcattagca 470
Query: 361 gggttttagtaactttcgtttcaaaatcagaattcttagctacattttaaattcagtgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gggttttagtaactttcgtttcaaaatcagaattcttagctacattttaaattcagtgtt 410
Query: 421 tgttcatcagtgtccagactgcagcatatatgaagcatctaataatccaagatgcttact 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agttcatcagtgtccagactgcagcatatatgaagcatctaataatccaagatgcttact 350
Query: 481 atgacaaacggtatgaaatttaagtatccagtaaggaactttaaagttaataacaggaca 540
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 349 atgacaaatggtatgaaatttaagtatccagtaaggaacttcaaagttaataataggaca 290
Query: 541 agtgttgcaactataatatgaaaacttggaaatatgtttaaggtattctctcaactacta 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 289 agtgttgcaactataatatgaaaacttggaaatatatttaaggtattctctcaactacta 230
Query: 601 aatatcaagttttaatactatggccttac 629
|||||||||||||||||||||||||||||
Sbjct: 229 aatatcaagttttaatactatggccttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1025
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1015
Effective search space: 628285
Effective search space used: 628285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
