Query= MSMg01no144_j09.b1 MSMg01no144_j09.b1 CHROMAT_FILE:
MSMg01no144_j09.b1 PHD_FILE: MSMg01no144_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:27 2005
(278 letters)
>mm_chr5_106702956_106703634
Length = 679
Score = 474 bits (245), Expect = e-138
Identities = 264/273 (96%), Gaps = 6/273 (2%)
Strand = Plus / Minus
Query: 5 ggaattctgttttgtc-gcttccatgaagtcagacaaggagctgaccaccaccagcctga 63
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggaattctgttttgtcagcctccatgaagtcagacaaggagctgaccaccaccagcctga 375
Query: 64 aatatagcgctgaccttgaggaagaccacagaggaggtggcaccaagtcccctccctaac 123
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 374 aatatagcgctaaccttgaggaagaccacagaggacgtggcaccaagtcccctccctaac 315
Query: 124 caagacagctggtgggagagagatctgtcttttcaatggtgtggcattggattcattaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 caagacagctggtgggagagagatctgtcttttcaatggtgtggcattggattcattaac 255
Query: 184 cttactccaaggctcaggaatagctggctaacacaaaacagactccatgttttgctttgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttactccaaggctcaggaatagctggctaacacaaaacagactccatgttttgctttgg 195
Query: 244 tttggtttggtttggtttggtttgcttggtttg 276
||||||||||||||||||| |||||||||
Sbjct: 194 tttggtttggtttggtttg-----cttggtttg 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 679
Length adjustment: 9
Effective length of query: 269
Effective length of database: 670
Effective search space: 180230
Effective search space used: 180230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no144_j09.g1 MSMg01no144_j09.g1 CHROMAT_FILE:
MSMg01no144_j09.g1 PHD_FILE: MSMg01no144_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:27 2005
(632 letters)
>mm_chr5_106676049_106677080
Length = 1032
Score = 1036 bits (536), Expect = 0.0
Identities = 608/632 (96%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 1 actcagacaaccagattcttctatggcaaacctttattgcttcatctgaaggaagacccc 60
|||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 actcggacaaccggattcttctatggcaaaactttattgcttcatctgaaggaagacccc 260
Query: 61 gaacaaggaaaatggtgctgcttatatacccctccgtatgacgtgtcagctcctgattag 120
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 261 gaacaaggaaaatggtgctgcttatatacccctccgtgtgacgcatcagctcctaattag 320
Query: 121 ctgctcactcatcacccctctactacaccccgggatggacagtgacttggcatgaattta 180
|||||||||||||||||| ||||||| | ||||||||| ||||||||||||| ||| |||
Sbjct: 321 ctgctcactcatcaccccactactacgctccgggatgggcagtgacttggcacgaactta 380
Query: 181 ctcttgcacctgcacacattacttgtttaccagttaggcacagtggaggctgatgatggc 240
||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 381 ctcttgcacctgcgcacattacttgtttaccagttaggcacagcggaggctcatgatggc 440
Query: 241 gattgctcagggctctccacatttggctcctggggagagctccatcaacctagatgaaaa 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattgctcacaactctccacatttggctcctggggagagctccatcaacctagatgaaaa 500
Query: 301 gaagttcattaaaacggaaagtgttcatttatgcagttacttgcattataggttttgggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagttcattaaaacggaaagtgttcatttatgcagttacttgcattataggttttgggg 560
Query: 361 gtaaagagtatgtctcgtagctttcccagacattcttattgttattttaccctccttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaagagtatgtctcgtagctttcccagacattcttattgttattttaccctccttcct 620
Query: 421 cctcctgtgtgtaactttttccttccccaacaacaccctcctgtatttaattttctattg 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 cctcctgtgtgtaactttttccttccccaacaacaccctcatgtatttaattttctattg 680
Query: 481 gctcacgtgtcatgctattctcctttccctttcccccacattcttctgtatttacctccc 540
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcacgtatcatgctattcccctttccctttcccccacattcttctgtatttacctccc 740
Query: 541 taaggagacccccctttcccagctccctctcaggtcacccgtacctgccattcccctctc 600
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 taaggagaccccc-tttcccagctccctctcaggtcacccatacctgccattcccctctc 799
Query: 601 tactgctctccaacacctctatgctgtcaatg 632
||||||||||||||||||||||||||||||||
Sbjct: 800 tactgctctccaacacctctatgctgtcaatg 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
