BAC Information

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BAC

Clone NameMSMg01-144O17
Chromosome5 (Build37)
Map Location 83,023,359 - 83,124,762
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144O17.T7 (MSMg01no144_o17.b1)MSMg01-144O17.TJ (MSMg01no144_o17.g1)
ACCAG348855AG348856
length743743
length of high quality
(start - end)		695 (45 - 739)573 (75 - 647)
definitionCHROMAT_FILE: MSMg01no144_o17.b1 PHD_FILE: MSMg01no144_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:52 2005CHROMAT_FILE: MSMg01no144_o17.g1 PHD_FILE: MSMg01no144_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,124,089 - 83,124,762)(83,023,359 - 83,023,708)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTTACAGCACCATTAAGGGTGTCTTGTGTTTTATCCTTCATTT
TATCATTCTGACTGCTTTCTCTTTATCCTGGTGCGTCTGCCTAAAGGTTT
GTAAATTTTATTAAACGTCTTCGTTTTACTACTGGTTCTCTATTTTATGC
TTCTGTTGCATATATTTTAGCATTTGTGATCTCTGTCTTTCTGACAGTTA
TGTATTTATATCACTCTCCGTTCTTTTTGTTTGTTTATTAGAATTAAATG
CCACCACAACCGTGTGAGACCCTGTATTTATTTCTTACATAGGTGGTATC
TGCTAACATAAACTAGAGTCCACATATCACTCAATCTATACCCTATAAGA
TTTGTTATGTGGAGGCTGCCGAGATCGACCCTTTGATGAAGTGCTTTATA
CAAATAATGTGGATTAAAATATTAAAATTTAGATCTCCAGAGTCTGGAAT
AAAAATTTGGACTAGGTGCATGCTGATAACCTCAGTGCTGAGAAACAGTC
AGGATAATTCCTGGGAAACAGCTGTTTATTAAGGCTAGTCAAGTGGGGAG
CTTTCATTTCAATGAGACATCCTGATTCAAAAACATTAGTTCGAAAAGTG
AGAAGCAAAAGATCTCTAGATGTCAATCTCTGGCTCTACATGCACCAATA
CTGACAAGCGTGACTACTTGTCATACACATGTATATAGGTTGG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTATCGGGG
TGTAATAATGGGGTGATGGGCAAGCAACGAATCAGGAGCTGTCACGCCAT
ATCAGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCCATTTTC
CCGGTTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTCTTGCCGCGGAA
GATTCTGGTTTGTTGCATCTTTCTTGCCGGTCGAGCGGGACGCAATATAA
ACTGTCACTCTAGTCAATCTCTTTTGTTTTTTTCCTATTTAGACAACTAA
GGAGGACCTAAATTCTTTTCCTTATAGCTATGCTTTAACCACAATGTTTT
ACATAAGAAACTGGGCTATCAAAAATGGAAATAGTGAATTGTTAAAACAC
TGAGGGAATTTCTGAGTAAAACAAGGGGAAATCAGCAATTTTGTGAAAAG
ATTATATTTCAATATGTTACAAAACATTTAAAGAATTATGGTATTGGATA
ATGATAAAAAACTGAACAAACTTTCAGCAACTTTACCAATGTTCTGGATT
TTCTATTACCTCACTGTGAGGATATATTTTTAAAATATACTATGGTCCGG
GGTGGCGGGCTTTTTATTCTCTTATCTATAAGGCTTAGGCATGCGAGTTT
ATTGCATTCCTGCAGCGAGTTATAGGTGAGTCCCTGCTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_o17.b1 MSMg01no144_o17.b1 CHROMAT_FILE:
MSMg01no144_o17.b1 PHD_FILE: MSMg01no144_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:52 2005
         (695 letters)



>mm_chr5_83124012_83125106
          Length = 1095

 Score = 1226 bits (634), Expect = 0.0
 Identities = 664/674 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttcttacagcaccattaagggtgtcttgtgttttatccttcattttatcatt 63
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 751 ggaattctttcttacagcatcattaagggtgtcctgtgttttatccttcattttatcatt 692

                                                                       
Query: 64  ctgactgctttctctttatcctggtgcgtctgcctaaaggtttgtaaattttattaaacg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 691 ctgactgctttctctttatcctggtgcgtctgcctaaaggtttgtaaattttattgaacg 632

                                                                       
Query: 124 tcttcgttttactactggttctctattttatgcttctgttgcatatattttagcatttgt 183
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcttctttttactactggttctctattttatgcttctgttgcatatattttagcatttgt 572

                                                                       
Query: 184 gatctctgtctttctgacagttatgtatttatatcactctccgttctttttgtttgttta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gatctctgtctttctgacagttatgtatttatatcactctccgttctttttgtttgttta 512

                                                                       
Query: 244 ttagaattaaatgccaccacaaccgtgtgagaccctgtatttatttcttacataggtggt 303
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttagacttaaatgccaccacaaccgtgtgagaccctgtatttatttcttacataggtggt 452

                                                                       
Query: 304 atctgctaacataaactagagtccacatatcactcaatctataccctataagatttgtta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atctgctaacataaactagagtccacatatcactcaatctataccctataagatttgtta 392

                                                                       
Query: 364 tgtggaggctgccgagatcgaccctttgatgaagtgctttatacaaataatgtggattaa 423
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgtggaggctggggagatcgaccctttgatgaagtgctttatacaaataatgtggattaa 332

                                                                       
Query: 424 aatattaaaatttagatctccagagtctggaataaaaatttggactaggtgcatgctgat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatattaaaatttagatctccagagtctggaataaaaatttggactaggtgcatgctgat 272

                                                                       
Query: 484 aacctcagtgctgagaaacagtcaggataattcctgggaaacagctgtttattaaggcta 543
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 271 aacctcagtgctgagaaacagtcaggatgattcctgggaaacagctgtttattaagtcta 212

                                                                       
Query: 544 gtcaagtggggagctttcatttcaatgagacatcctgattcaaaaacattagttcgaaaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gtcaagtggggagctttcatttcaatgagacatcctgattcaaaaacattagttcgaaaa 152

                                                                       
Query: 604 gtgagaagcaaaagatctctagatgtcaatctctggctctacatgcaccaatactgacaa 663
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gtgagaagtaaaagatctctagatgtcaatctctggctctacatgcaccaatactgacaa 92

                         
Query: 664 gcgtgactacttgt 677
           ||||||||||||||
Sbjct: 91  gcgtgactacttgt 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no144_o17.g1 MSMg01no144_o17.g1 CHROMAT_FILE:
MSMg01no144_o17.g1 PHD_FILE: MSMg01no144_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:52 2005
         (573 letters)



>mm_chr5_83022936_83023908
          Length = 973

 Score =  592 bits (306), Expect = e-173
 Identities = 339/350 (96%)
 Strand = Plus / Plus

                                                                       
Query: 224 taaactgtcactctagtcaatctcttttgtttttttcctatttagacaactaaggaggac 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taaactgtcactctagtcaatctcttttgtttttttcctatttagacaactaaggaggac 483

                                                                       
Query: 284 ctaaattcttttccttatagctatgctttaaccacaatgttttacataagaaactgggct 343
           ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 484 ctaaattcttttctttatagctatgctttaaccacgatgttttacataagaaactgggct 543

                                                                       
Query: 344 atcaaaaatggaaatagtgaattgttaaaacactgagggaatttctgagtaaaacaaggg 403
           |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 544 atcaaaaatgaaaataatgaattgttaagacactgagggaatttctgagtaaaacaaggg 603

                                                                       
Query: 404 gaaatcagcaattttgtgaaaagattatatttcaatatgttacaaaacatttaaagaatt 463
           ||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 604 gaaatcagctattgtgtgcaaagattatatttcaatatgttacaaaacatttgaagaatt 663

                                                                       
Query: 464 atggtattggataatgataaaaaactgaacaaactttcagcaactttaccaatgttctgg 523
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atggtcttggataatgataaaaaactgaacaaactttcagcaactttaccaatgttctgg 723

                                                             
Query: 524 attttctattacctcactgtgaggatatatttttaaaatatactatggtc 573
           |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 724 attttctattacctcactgtgaggatatgtttttaaaatatactatggtc 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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