BAC Information

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BAC

Clone NameMSMg01-145D14
Chromosome5 (Build37)
Map Location 15,112,667 - 15,113,257
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145D14.T7 (MSMg01no145_d14.b1)MSMg01-145D14.TJ (MSMg01no145_d14.g1)
ACCAG349081AG349082
length685690
length of high quality
(start - end)
592 (48 - 639)284 (72 - 355)
definitionCHROMAT_FILE: MSMg01no145_d14.b1 PHD_FILE: MSMg01no145_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:15 2005CHROMAT_FILE: MSMg01no145_d14.g1 PHD_FILE: MSMg01no145_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNCCTCTATAATTGCGGCGCTAATACGACTCCTATTCAAGAGAAGCGCG
GAATTCCTCTTCTCTCTACAACTGGGTCTTTGTCAAGTTGATAAAATGCA
AGAAACATATCGTGCAAATGAAACGGAAGCAGCATTGAAAGTCTGAGTAG
TCGGTGGGCATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTG
GTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCCCTGTTCTAGTG
CTAAACCAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAG
CTTGGTGGCTGATTATGGGATGTATCCCCGGGTAGGGTAGTCTCTGGATG
GTCCATCCTTTCGTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGGTATT
TTGTTCCCTATTCCGACACCACTGCATATGCCAGCAATTTTTTGCTGAAA
GGACCTTGATATAGCTGTCTTGTATGGCTATGCCAGTACCTGGCAAACAG
AAGTGGATGCTCACAGTCATTTATAGGATGGAGCACAGGGCCTCCAATGG
AGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTATAG
GTGGAACAAGAATATGAACTAACCAGTACCCCCCAGAGCTTGTGTCTCTA
GCTGCATATGTAGCAGAAGATGGCCTAGTCAGCCA
NCCCCATGCAGTGGTAGCCTGGCGGCGCCTGTTTCCGACTGGAGGTGAAC
TATAGAAGTTACANGACCTGCCTGATTTTTCCAAGACTTTTAACATGAAT
GGGTGTTAAATTTTATCACCCTATTTCTCAGAATCTAATGAGATGATCAT
GTGTTTTTTGTTTTTCAGTGGATTTCTGTATGTTGAATTATCTCTGCATT
TCTTGGATGAAGCCTGCTTGATTGTGGTAAATGATCATTTTGATGTGTTC
TTGTATTTGGTTTGCAAGAATTTTATTGAGTTTTTTTTTGCATTAATATT
CATAAGCAAAAATGTTCCGTAGCTCTCTTTCTTTGNTGAGTCTTTGTGTG
TTTAGGAATATTTCCCCCCGTGGCTTCATAGAACAAATTTGGTAGCGTTC
CTTCTGTTTCTACCCCCCGCCATAGTTTGAAGAGTATTGGGATTAGGCCT
TCTTTGACGGTCTGTAATAATTTTGTATCAATCCCATCTAGTCCTGTGCT
TTGTTTCGTTGGCAGAATTTTAATGATCGCTTCACTTTCTTTCCCATTTA
AGGGAATTGTACCACTGTTTACTTTTATATAGCATTCCTTCTTTTTACCT
ATTGCTTGTTTTATCCCATGCCCTTTTTCCTCTCACTTTCCTTCCGTAAC
CGATCTTTTTTTTTTTTTTTCTACTATCGCACCTTCTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_d14.b1 MSMg01no145_d14.b1 CHROMAT_FILE:
MSMg01no145_d14.b1 PHD_FILE: MSMg01no145_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:15 2005
         (592 letters)



>mm_chr5_15112464_15113456
          Length = 993

 Score =  957 bits (495), Expect = 0.0
 Identities = 568/595 (95%), Gaps = 10/595 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctcttctc---tctacaactgggtctttgtcaagttgataaaatgcaagaaaca 60
           ||||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctcttctcaggt--acaactgggtctttgtcaagttgataaaatgcaagaaaca 261

                                                                       
Query: 61  tatcgtgcaaatgaaacggaagcagcattgaaagtctgagtagtcggtgggcatccctgc 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 262 tatcgtgcaaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgc 321

                                                                       
Query: 121 acatgtgcctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatgtgcctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagt 381

                                                                       
Query: 181 caatcatggtccctgttctagtgctaaaccagattctggagaaagctctattgttgttaa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caatcatggtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaa 441

                                                                       
Query: 241 gacttgagaggagcttggtggctgattatgggatgtatccccgggtagggtagtctctgg 300
           ||||||||||||||||||||||||||||||||||| |||  ||||| |||||||||||||
Sbjct: 442 gacttgagaggagcttggtggctgattatgggatggatcatcgggtggggtagtctctgg 501

                                                                       
Query: 301 atggtccatcctttcgtcttagctttgtctccgtaactccttccatgggtattttgttcc 360
           ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 502 atggtccatcctttcttcttagctttgtctccgtaactccttccatggcttttttgttcc 561

                                                                       
Query: 361 ctattccgacaccactgcatatgccagcaattttttgctgaaaggaccttgatatagctg 420
           |||||| ||||| |||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 562 ctattctgacactactgcatatgccagcaagattttgctgaaaggaccttgatatagctg 621

                                                                       
Query: 421 tcttgt-atggctatgccagtacctggcaaaca--gaagtggatgctcacagtcatttat 477
           |||||| | |||||||||||| |||||||||||  ||||||||||||||||||||| |||
Sbjct: 622 tcttgtga-ggctatgccagtgcctggcaaacacagaagtggatgctcacagtcatctat 680

                                                                       
Query: 478 aggatggagcacagggcctccaatggagaagctagagaaagcacccaaggagctgaaggg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggatggagcacagggcctccaatggagaagctagagaaagcacccaaggagctgaaggg 740

                                                                  
Query: 538 atctgcaaccctataggtggaacaagaatatgaactaaccagtaccccccagagc 592
           ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 741 atctgcaaccctataagtggaacaacaatatgaactaaccagtaccccc-agagc 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space:   572106
Effective search space used:   572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)