Query= MSMg01no145_d17.b1 MSMg01no145_d17.b1 CHROMAT_FILE:
MSMg01no145_d17.b1 PHD_FILE: MSMg01no145_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:16 2005
(657 letters)
>mm_chr5_67068638_67069696
Length = 1059
Score = 1156 bits (598), Expect = 0.0
Identities = 637/656 (97%), Gaps = 12/656 (1%)
Strand = Plus / Minus
Query: 5 gaattcttcagtg-tttccccattacatatgcagaataagtactctatagatggggcaga 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gaattcttcagtgttttacccattacatatgcagaataagtactctatagatggggcaga 948
Query: 64 ttagacggcagctaaaggacaaaacagtagcccaaccaaactggaatgtcctcttaaaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 ttagacggcagctaaaggacaaaacagtagcccaaccaaactggaatgtcctcttaaaaa 888
Query: 124 atccactggggcctgcaaaatgagaccagtgagaggggttccaagcgagcgggctcacca 183
||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 887 atccactggagcctgcaaaatgagacca---------gttccaagggagcgggctcacca 837
Query: 184 ctgcctcccagaggccttgcctgagctctgctcaaaacctccaagtcatcatggttcctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctgcctcccagaggccttgcctgagctctgctcaaaacctccaagtcatcatggttcctc 777
Query: 244 tggagagcagctccagaaacctctacggcaggacgagagccgactttg--tcagtcaagg 301
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 776 tggagagcagctccagaaacctctacggcaggacgagagccgactttggttcagtcaagg 717
Query: 302 aagccaatctgacatggagtggtagcaatgaaagctccgactggaaaacgcgtcgccgac 361
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aagccaatctgacacggagtggtagcaatgaaagctccgactggaaaacgcgtcgccgac 657
Query: 362 atcatccaaactccatgtttgaactcatcagagactatctgctaggagcagggcctagaa 421
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 656 atcatccaaactccatgtttgaactcatcagagaccatctgctaggagcagggcctagaa 597
Query: 422 cttcccatacagcttagttccggtcaggtcaaggatgcctctagaacacctgccctcagg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cttcccatacagcttagttccggtcaggtcaaggatgcctctagaacacctgccctcagg 537
Query: 482 acggtatttaattagcctcatcccatctggcagagacgcaaatgcctccaagttttacca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 acggtatttaattagcctcatcccatctggcagagacgcaaatgcctccaagttttacca 477
Query: 542 atgtcatcccctcttaaatcattaggaagctaagagcccacaggagggagacgatgcagt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atgtcatcccctcttaaatcattaggaagctaagagcccacaggagggagacgatgcagt 417
Query: 602 gatttactggggctccacacacggcgagacaacgcataccccccaattttgtcttt 657
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 416 gatttactggggctccacacacggcgagacaacgcataacccccagttttgtcttt 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1059
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1049
Effective search space: 678703
Effective search space used: 678703
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_d17.g1 MSMg01no145_d17.g1 CHROMAT_FILE:
MSMg01no145_d17.g1 PHD_FILE: MSMg01no145_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:16 2005
(606 letters)
>mm_chr5_66987730_66988735
Length = 1006
Score = 1085 bits (561), Expect = 0.0
Identities = 600/625 (96%), Gaps = 19/625 (3%)
Strand = Plus / Plus
Query: 1 ctgctgggagtgtgaactgtgtggtattccaaccccagtcttctcaaaacagctagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctgctgggagtgtgaactgtgtggtattccaaccccagtcttctcaaaacagctagagcc 241
Query: 61 ctaaaggtagtatttttttgagccggtattttactgtgaccaagcactgatctaagtatt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 242 ctaaaggtagtatttttttgagccagtattttactgtgaccaagcactgatctaagtatt 301
Query: 121 tcatcacattctcaccctggcccgccaagccttttatttctatttaaaatgtgacaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcatcacattctcaccctggcccgccaagccttttatttctatttaaaatgtgacaatat 361
Query: 181 ataggcctgagaagcccagaggcagcagggtttgaatccctcattccctgtattgtggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 362 ataggcctgagaagcccagaggcagcagggtttgaatccctcattccctgtattgcggtc 421
Query: 241 gctgttgttttccacttgcaaaagcagatccttctcctcctaataatgctacagtcttcc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 422 gctgttgttttccacttgcaaaagcagatccttctcctcctaataatgctacagccttcc 481
Query: 301 tttgctgcctacctggaaaactcctactcgaccttc-------------------ctttc 341
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 482 tttgctgcctacctggaaaactcctactcgaccttcaaatcccaacttgaggatcctttc 541
Query: 342 ctgacacagcacaggactccactttctactttaatgtttttcgttcaagtgctatttcac 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctgacacagcacaggactccactttctactttaatgtttttcgttcaagtgctatttcac 601
Query: 402 taagaggcaaataaacaaacccccatccacttgatcccgagctcggggtaagaagtagtc 461
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 602 taagaggcaaataaacaaacccccatccacttgaccccgagctcggggtaagaaggagtc 661
Query: 462 atgtctgaatcacacctcaattccccacatatcaaaacatgaaagtcactaatctgagac 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atgtctgaatcacacctcaattccccacatatcaaaacatgaaagtcactaatctgagac 721
Query: 522 ctgcatccctttggaatataaggacaaccacgaagggttcagtattcaagggactgtacc 581
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 722 ctgcatccctttggaatataaggacagccacgaagggttcagtattcaagggactgtacc 781
Query: 582 ttaatttagttagtcggcacagtaa 606
|||||||||||||||||||||||||
Sbjct: 782 ttaatttagttagtcggcacagtaa 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
