Query= MSMg01no145_h19.b1 MSMg01no145_h19.b1 CHROMAT_FILE:
MSMg01no145_h19.b1 PHD_FILE: MSMg01no145_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:35 2005
(559 letters)
>mm_chr5_24191755_24192709
Length = 955
Score = 996 bits (515), Expect = 0.0
Identities = 545/559 (97%), Gaps = 9/559 (1%)
Strand = Plus / Minus
Query: 1 agtgagtcaccatctcaaaaaaattaattaattaattaaattaaaccactgtattcaaac 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 716 agtgagtcaccatctcaaaaa----aattaattaattaaattaaaccactgtattcaaac 661
Query: 61 ctatgaaaatccagttacaggcaccagaatgacatgtgttaggtcaaaaggaagaaaatc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ctatgaaaatccagttacaggtaccagaatgacatgtgttaggtcaaaaggaagaaaatc 601
Query: 121 taacagcccagttttcaattttaattggagaactgtttcatgtgtgtagctgggcgttcc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 600 taacagcccagttttcaattttaattggagaactgtttcatgtgtgttgctgggcgttcc 541
Query: 181 aacgcagaaaacacgtaaatcatcaagatcagcgctctgaaccgaaagtgaaaccttagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aacgcagaaaacacgtaaatcatcaagatcagcgctctgaaccgaaagtgaaaccttagg 481
Query: 241 catcaatgttgaaaataccactttcacttgtagatcaatcgagattgcatacaaccttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 catcaatgttgaaaataccactttcacttgtagatcaatcgagattgcatacaaccttac 421
Query: 301 gcacattcaacacgttccctctcggggaaatgacatgccattagggcctcctatttaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gcacattcaacacgttccctctcggggaaatgacatgccattagggcctcctatttaaaa 361
Query: 361 gtaagcaagggaaggaggcgaggacaagtgtgggtccagaaagcttgcgttctcacaccc 420
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 g----caagggaaggaggcgaggacaagtgtgggtccagaaagcttgcgttctcacaccc 305
Query: 421 cgcgttccgctgtcagccccggcagtcagctcatccaagctcaagctgctggctggtgtc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 304 cgcgttccgctgtcagccccggcagtcagctcatccaaactcaagctgctggctggtgtc 245
Query: 481 catcccttcccctccgccccgccgcgacccccaacccgcttccgccccagcccgcctcgc 540
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 244 catcccttcccctccgccccgccgcgaccccct-cccgcttccgccccagcccgcctcgc 186
Query: 541 cgagtccgcctggccgctc 559
|| ||||||||||||||||
Sbjct: 185 cgcgtccgcctggccgctc 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 955
Length adjustment: 10
Effective length of query: 549
Effective length of database: 945
Effective search space: 518805
Effective search space used: 518805
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_h19.g1 MSMg01no145_h19.g1 CHROMAT_FILE:
MSMg01no145_h19.g1 PHD_FILE: MSMg01no145_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:35 2005
(501 letters)
>mm_chr5_24052206_24053106
Length = 901
Score = 926 bits (479), Expect = 0.0
Identities = 494/499 (98%)
Strand = Plus / Plus
Query: 1 cccagccgaagaaccccatacagcgccatgttctgccggatatcaaacagggacggcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagccgaagaaccccatacagcgccatgttctgccggatatcaaacagggacggcatg 260
Query: 61 ggcatcttgtttgccaaagtcagagtggacccgagatagaggcaatcacctgtggggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcatcttgtttgccaaagtcagagtggacccgagatagaggcaatcacctgtggggacc 320
Query: 121 gggaggggacaactggtgagtgaccctcctgggagtgtctgtgggagagatctgttggaa 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gggaggggacaactggtgagtgaccctcctgggagtgtctgtgagagagatctgttggaa 380
Query: 181 aggaggcctcaggaaacagggcaggtgtggaagggcaagggtggccacacctagattcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaggcctcaggaaacagggcaggtgtggaagggcaagggtggccacacctagattcag 440
Query: 241 ggacatgttaggggctcaccaatgtagtcactgagtgtcactagtgcagacttctttata 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggacatgggaggggctcaccaatgtagtcactgagtgtcactagtgcagacttctttata 500
Query: 301 aggccaataataacaagctcttcaaacagtgagtccacagacccgcgggagagtggtgta 360
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 aggccaataataacaagctcttcaaacagtgagtccacagacctgtgggagagtggtgta 560
Query: 361 gaaggaccccagggatgttagtgagaggagacaagggacaaggaagtggagatggggctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaggaccccagggatgttagtgagaggagacaagggacaaggaagtggagatggggctg 620
Query: 421 tgagcgtgagaagaggtgacaaggggtgccctggtaatgttttgggatcagaaatgtctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagcgtgagaagaggtgacaaggggtgccctggtaatgttttgggatcagaaatgtctc 680
Query: 481 tggacagccagaatcagaa 499
|||||||||||||||||||
Sbjct: 681 tggacagccagaatcagaa 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
