BAC Information

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BAC

Clone NameMSMg01-145H24
Chromosome5 (Build37)
Map Location 32,064,389 - 32,064,902
singlet/doubletsinglet
Overlap geneBre
Upstream geneDpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145H24.T7 (MSMg01no145_h24.b1)MSMg01-145H24.TJ (MSMg01no145_h24.g1)
ACCAG349289AG349290
length695686
length of high quality
(start - end)
529 (78 - 606)514 (74 - 587)
definitionCHROMAT_FILE: MSMg01no145_h24.b1 PHD_FILE: MSMg01no145_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:36 2005CHROMAT_FILE: MSMg01no145_h24.g1 PHD_FILE: MSMg01no145_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCG
CGGAATTCACAACTCACTTCAAGAAAACAGGAGAACACTGCTAAAGAGTT
ACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCC
TTAAAGAAAAACAGAAAAACACAACCAAACAGGTAGAAGTCCTTATAGAA
AAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACT
AGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGA
CGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGC
ATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGA
CTCCATAGAGAACATCGGCACAACAACCAAAGAAAATGGAAAATGCAAAA
GGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCA
AACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGG
ACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAA
AGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGA
CTGGACCCAGAAAGAAATTCCTCCCGACACATAATAATCAGAACA
NNNTCCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTGCTGTGATAAGACACTGACTAAA
AGCAAGTTGGAGAGGAACACATTTATTTCTTTTTACATGTCTCAGCTCAC
ACGCCATCACCGAGGGAAAGCAGGGTAGGAACTCAAACATGGCCGGAACC
TGAAGGAACCCTGCTTACTGGCTTGCTCAGTTTGCCGCCTTGTACACCTC
AGGACCACCTCCCCACAATACCCACTGTAGTCTGGAGACAGTTTCCCAAT
TGAAGTTCTCTTCCCAGATAACCCTATCTTATGTTAAGTTGACAAAGAAG
ACATGCATGACCAACCAGGCCAATTATCTACTTGGTATCCTTGTTGTTGG
GACTTCTTGTGGCTTTCATTGAAATATAGGCTAAGCATCCCAAACCTTTC
AGGTTACAGGGAAGAGGGGCTCTCTAACCAAATGCCACATGCAAGTCCAC
TAGCCCAGTGACACCTAGTATGACAAAGCTCTGGTGCACTCTGGTCTTGG
CCTCCAGTTTGGCCAGGAGGTCAGCCATGTAGTGTTTCTTGTGCATGAAC
CAGTCAGACCTTTCCCTCATGACTGCAGATAACTAAAATAATAAACCCGC
GTGCGTGCGTGTGTGTGTGCGTGTGCGCGTGCGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_h24.g1 MSMg01no145_h24.g1 CHROMAT_FILE:
MSMg01no145_h24.g1 PHD_FILE: MSMg01no145_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:36 2005
         (514 letters)



>mm_chr5_32064189_32065102
          Length = 914

 Score =  886 bits (458), Expect = 0.0
 Identities = 500/514 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgctgtgataagacactgactaaaagcaagttggagaggaacacatttatttctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgctgtgataagacactgactaaaagcaagttggagaggaacacatttatttctttt 260

                                                                       
Query: 61  tacatgtctcagctcacacgccatcaccgagggaaagcagggtaggaactcaaacatggc 120
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 261 tacatgtctcagctcacacgccatcactgaggggaagcagggtaggaactcaaacatggc 320

                                                                       
Query: 121 cggaacctgaaggaaccctgcttactggcttgctcagtttgccgccttgtacacctcagg 180
           |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct: 321 cggaacctgaaggaaccctgcttagtggcttgctcagtttgtcgccttatacacctcagg 380

                                                                       
Query: 181 accacctccccacaatacccactgtagtctggagacagtttcccaattgaagttctcttc 240
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 381 accacctccccacaatacccactgtagtctggagacattttccctattgaagttctcttc 440

                                                                       
Query: 241 ccagataaccctatcttatgttaagttgacaaagaagacatgcatgaccaaccaggccaa 300
           ||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||
Sbjct: 441 ccagataaccctagcttatgtcaagttgtcaaagaacacatgcatgaccaaccaggccaa 500

                                                                       
Query: 301 ttatctacttggtatccttgttgttgggacttcttgtggctttcattgaaatataggcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatctacttggtatccttgttgttgggacttcttgtggctttcattgaaatataggcta 560

                                                                       
Query: 361 agcatcccaaacctttcaggttacagggaagaggggctctctaaccaaatgccacatgca 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcatcccaaacctatcaggttacagggaagaggggctctctaaccaaatgccacatgca 620

                                                                       
Query: 421 agtccactagcccagtgacacctagtatgacaaagctctggtgcactctggtcttggcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtccactagcccagtgacacctagtatgacaaagctctggtgcactctggtcttggcct 680

                                             
Query: 481 ccagtttggccaggaggtcagccatgtagtgttt 514
           ||||||||||||||||||||| ||||| ||||||
Sbjct: 681 ccagtttggccaggaggtcagtcatgtcgtgttt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)