Query= MSMg01no145_j20.b1 MSMg01no145_j20.b1 CHROMAT_FILE:
MSMg01no145_j20.b1 PHD_FILE: MSMg01no145_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:45 2005
(564 letters)
>mm_chr5_68626169_68627133
Length = 965
Score = 696 bits (360), Expect = 0.0
Identities = 369/372 (99%), Gaps = 1/372 (0%)
Strand = Plus / Minus
Query: 4 gaattccatactctgtccttgttgaaagag-ttatcatggtattgatattaacttgtgtc 62
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 376 gaattccatactctgtcattgttgaaagagtttatcatggtattgatattaacttgtgtc 317
Query: 63 tttcctgtacttgtgtaacactataggagtgctattgagtacaagtcaagacagtcctac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttcctgtacttgtgtaacactataggagtgctattgagtacaagtcaagacagtcctac 257
Query: 123 tcttttttatttatgttaattaacctccttaatagtttaatttttattaaatgtatttat 182
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 256 tcttttttatttatgttaattaacctccttaacagtttaatttttattaaatgtatttat 197
Query: 183 tcactttacatcccaatatcagctcctcagtacctcctcacacagatgccccattcctcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tcactttacatcccaatatcagctcctcagtacctcctcacacagatgccccattcctcc 137
Query: 243 ctccccttctcccttgagaatggagactccccctctaagtatcactctcctaccctactc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctccccttctcccttgagaatggagactccccctctaagtatcactctcctaccctactc 77
Query: 303 ccatcccccaccccatcctctacttccagacacatcaagtcactgcagaactaggtgtat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ccatcccccaccccatcctctacttccagacacatcaagtcactgcagaactaggtgtat 17
Query: 363 ctctcccactga 374
||||||||||||
Sbjct: 16 ctctcccactga 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space: 529070
Effective search space used: 529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_j20.g1 MSMg01no145_j20.g1 CHROMAT_FILE:
MSMg01no145_j20.g1 PHD_FILE: MSMg01no145_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:45 2005
(485 letters)
>mm_chr5_68486513_68487394
Length = 882
Score = 859 bits (444), Expect = 0.0
Identities = 474/486 (97%), Gaps = 5/486 (1%)
Strand = Plus / Plus
Query: 1 attaacatttttcttacaggcttgggaaataaacaaaccagaaagcccttcttttagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaacatttttcttacaggcttgggaaataaacaaaccagaaagcccttcttttagaaa 260
Query: 61 tgttcacctgcacagagtgcttgctcatttgtacatatgacaaagtgggtcggtcgctga 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tgttcacctgcacagagtgcttgctcatttgtacatatgacaaagtg----ggtcgctga 316
Query: 121 gaaaaggatttatgacacgtggtaaaaattttcaacttgactgtttccacatgcataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaaaggatttatgacacgtggtaaaaattttcaacttgactgtttccacatgcataaaa 376
Query: 181 aatatgaataacaattgcccttagtgggagatttggtttgtaatcattgcataacagtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatatgaataacaattgcccttagtgggagatttggtttgtaatcattgcataacagtat 436
Query: 241 aagag-ccaccattgaagcatatatcggtgtgtatctttatttgtgacctttagcttata 299
||||| || ||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 437 aagagcccgccattgaagcacatatcagtgtgtatctttacttgtgacctttagcttata 496
Query: 300 gagcagtaaggaagctgatatgtcaatggcattttatattagcaacgacattttcaacac 359
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 497 gagcagtaaggaagctgatatgtcaatggcattttatattagcaatgagattttcaacac 556
Query: 360 aacatatcttttgttgagtgtttattaggcaccagatttttgttatttttcatttgtcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aacatatcttttgttgagtgtttattaggcaccagatttttgttatttttcatttgtcaa 616
Query: 420 agaatcttacttcacaaatggtataacttcttgattttacaaacaagggactcccaatgt 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agaatcttactgcacaaatggtataacttcttgattttacaaacaagggactcccaatgt 676
Query: 480 ttgagt 485
||||||
Sbjct: 677 ttgagt 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 882
Length adjustment: 10
Effective length of query: 475
Effective length of database: 872
Effective search space: 414200
Effective search space used: 414200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
