Query= MSMg01no145_n18.b1 MSMg01no145_n18.b1 CHROMAT_FILE:
MSMg01no145_n18.b1 PHD_FILE: MSMg01no145_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:04 2005
(601 letters)
>mm_chr5_73300083_73301083
Length = 1001
Score = 1083 bits (560), Expect = 0.0
Identities = 583/598 (97%), Gaps = 12/598 (2%)
Strand = Plus / Plus
Query: 4 ggaattctgcgtagatgtcgcagtttggacatttaattccagtactcaggaggcatattt 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattctgcgtagatgtggcagtttggacatttaattccagtactcaggaggcatattt 275
Query: 64 gcgctcaaagccagtctgatctacagagtgggttccaggccagctaggtctggatgctga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcgctcaaagccagtctgatctacagagtgggttccaggccagctaggtctggatgctga 335
Query: 124 gactagaaacattcctggagactgggcttggtggtgcacacctttaatcccagtactctg 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 336 gactagaaacattcctggagactgggcttggtagtgcacacctttaatcccagtactctg 395
Query: 184 gaggtagaggcaggtggatctctgtgagttcaaggccagtttggtgtacaaaaaaagatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaggtagaggcaggtggatctctgtgagttcaaggccagtttggtgtacaaaaaaagatt 455
Query: 244 gaagccagttagggccatacagtgacaccctgtctcaaagcaccaaaataaatggagaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaagccagttagggccatacagtgacaccctgtctcaaagcaccaaaataaatggagaaa 515
Query: 304 gaaaattagaaaggccctatctcaaaacaccaaaataaatggagagagagagagagagac 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaaaattagaaaggccctatctcaaaacaccaaaataaatggagagagagagaga----- 570
Query: 364 agagagacagagagaaattagttccttgaattctttttttaaaaacatattttcccaaag 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 -------cagagagaaattagttccttgaattctttttttaaaaacatattttcccaaag 623
Query: 424 aggccccagatagaccaaagggaggcacatctggaggaaggacgctgttgaaggacagat 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acgccccagatagaccaaagggaggcacatctggaggaaggacgctgttgaaggacagat 683
Query: 484 gcaagacgacaggaggaaatgactgaccaagtgtgtgcaatgaagataaagtggaagccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcaagacgacaggaggaaatgactgaccaagtgtgtgcaatgaagataaagtggaagccc 743
Query: 544 cgatagtgaagactatgccaaagaatttgggaggtttttgttttttgttttgttttgg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cgatagtgaagactatgccaaagaatttgggaggtttttgttttttgttttgttttgg 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_n18.g1 MSMg01no145_n18.g1 CHROMAT_FILE:
MSMg01no145_n18.g1 PHD_FILE: MSMg01no145_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:04 2005
(457 letters)
>mm_chr5_73427608_73428465
Length = 858
Score = 555 bits (287), Expect = e-162
Identities = 336/369 (91%), Gaps = 27/369 (7%)
Strand = Plus / Minus
Query: 1 tcagac-aaacttttcttcgcttgtggattaacttgagtgattattacttaagttcttaa 59
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 343 tcagacaaaacttttcttcgcttgtggattaagttgagtgattattacttaagttcttaa 284
Query: 60 agggaattctggtggctcctagtagttttgcacgcaaagtagttctatgatctgaattat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agggaattctggtggctcctagtagttttgcacgcaaagtagttctatgatctgaattat 224
Query: 120 gatactgtctaatatgtcctatttttcaatagcatggctgcctaaaaccacacacaatga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gatactgtctaatatgtcctatttttcaatagcatggctgcctaaaaccacacacaatga 164
Query: 180 caacactagtagacgcgctggtgtaatagggaaaatttcacaaggccctgctcctagatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 caacactagtagacgcgctggtgtaatagggaaaatttcacaaggccctgctcctagatg 104
Query: 240 aagagctacaggctgtcagtggttgatcagaaagagagagacagagacttcgagagagag 299
||||||||||||| |||||||||||||||||||||
Sbjct: 103 aagagctacaggcaatcagtggttgatcagaaagag------------------------ 68
Query: 300 acagagacagagaggagagagaggagcactgtgtccaaagataggacccatgatcacaaa 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 67 --agagacagagaggagagagaggagcactgtgtccaaagataggatttatgatcacaaa 10
Query: 360 tggtcagcc 368
|||||||||
Sbjct: 9 tggtcagcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 858
Length adjustment: 10
Effective length of query: 447
Effective length of database: 848
Effective search space: 379056
Effective search space used: 379056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
