Query= MSMg01no146_b14.b1 MSMg01no146_b14.b1 CHROMAT_FILE:
MSMg01no146_b14.b1 PHD_FILE: MSMg01no146_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:28 2005
(172 letters)
>mm_chr5_15196127_15196698
Length = 572
Score = 277 bits (143), Expect = 3e-79
Identities = 155/159 (97%)
Strand = Plus / Plus
Query: 14 taaaatatcagttcagttaacttatggagaaaaagaactcagaacttggctatagatgtt 73
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 214 taaaatatcagttcagttaacttgtggagaaaaataactcagaacttggctatagatgtt 273
Query: 74 ataacttactttgaatgtatgtgtgcatgtgcattgtgcctgagagtatgggtgagtgag 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ataacttactttgaatgtatgtgtgcatgtgcattgtgcctgagagtatgggtgagtgag 333
Query: 134 tgttgctgtttatgtgtgtgtgtgtgtgtgtgtgtgtgt 172
||||||||| | |||||||||||||||||||||||||||
Sbjct: 334 tgttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space: 92496
Effective search space used: 92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no146_b14.g1 MSMg01no146_b14.g1 CHROMAT_FILE:
MSMg01no146_b14.g1 PHD_FILE: MSMg01no146_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:28 2005
(684 letters)
>mm_chr5_15112479_15113561
Length = 1083
Score = 1114 bits (576), Expect = 0.0
Identities = 657/686 (95%), Gaps = 7/686 (1%)
Strand = Plus / Plus
Query: 1 tcaggtacaactggggtttttgtcaagttgaccaaatgcaagaaacataccccgcaaatg 60
||||||||||||||| | ||||||||||||| |||||||||||||||| | |||||||
Sbjct: 201 tcaggtacaactggg-tctttgtcaagttgataaaatgcaagaaacatatcgtgcaaatg 259
Query: 61 aaacggaagcagcattgaaagtctgagtagccggtaggcatccctgcacatgtgcctgtg 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 260 aaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcacatgtgcctgtg 319
Query: 121 ggtagctgacagatcagctggtttaaaagcaagactggtggtctagtcaatcagggtcgc 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 320 ggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatcatggtcgc 379
Query: 181 tgttctggtgcttaaccagattctggagaaagctctattgttgttaagacttgagaggag 240
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttctagtgctaaaccagattctggagaaagctctattgttgttaagacttgagaggag 439
Query: 241 cttggtggctgattatgggatggatccccgggtggggtagtctctggatggtccatcctt 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 cttggtggctgattatgggatggatcatcgggtggggtagtctctggatggtccatcctt 499
Query: 301 tcgtcttagctttgtctccgtaactccttccatgggtattttgttccctattctgacact 360
|| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 500 tcttcttagctttgtctccgtaactccttccatggcttttttgttccctattctgacact 559
Query: 361 actgcatatgccagcaagattttgctgaaaggaccttgatatagctgtcttgtgaggcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 actgcatatgccagcaagattttgctgaaaggaccttgatatagctgtcttgtgaggcta 619
Query: 421 tgccagtacctggcaaaca--gaagtggatgctcacagtcatttataggatggagcacag 478
||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 tgccagtgcctggcaaacacagaagtggatgctcacagtcatctataggatggagcacag 679
Query: 479 ggcctccaatggagaagctagagaaagcacccaaggagctgaagggatctgcaaccctat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggcctccaatggagaagctagagaaagcacccaaggagctgaagggatctgcaaccctat 739
Query: 539 aggtggaacaacaatatgaactaaccagtacccccagagcttgtttctctagctgcatat 598
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 740 aagtggaacaacaatatgaactaaccagtacccccagagcttgtgtctctagctgcatat 799
Query: 599 gtaccagaagatggcctagtcagccatcattgggaagagaggcccctaggtcttgcaaac 658
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 800 gtagcagaagatggcctagtcagccagcattgggaagagaggcccctaggtcttgcaaac 859
Query: 659 tttatatgctgcatgcagtacagggc 684
||||||||| | ||||||||||||
Sbjct: 860 tttatatgc--c--gcagtacagggc 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
