Query= MSMg01no146_b19.b1 MSMg01no146_b19.b1 CHROMAT_FILE:
MSMg01no146_b19.b1 PHD_FILE: MSMg01no146_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:30 2005
(817 letters)
>mm_chr5_85999070_86000285
Length = 1216
Score = 1512 bits (782), Expect = 0.0
Identities = 809/818 (98%), Gaps = 3/818 (0%)
Strand = Plus / Plus
Query: 1 gatgtcaaaatattctagggaatcctaaacctcctgcttattttccacacctggaattaa 60
||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct: 201 gatgtcaaaatattctagggaatcctaaaa-tcctgcttattttccatagttggaattaa 259
Query: 61 gtagtgatgctcccagctgcagccctctctatgagatgcacatgaagtagatccttagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtagtgatgctcccagctgcagccctctctatgagatgcacatgaagtagatccttagac 319
Query: 121 actgtagaaactgttcacaagatgcacatatccacctcatccagtctcaattagttgacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actgtagaaactgttcacaagatgcacatatccacctcatccagtctcaattagttgacc 379
Query: 181 tagttgagtacacatgacaagggaaataggtgaaatgagttaatttaaatgttcctaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagttgagtacacatgacaagggaaataggtgaaatgagttaatttaaatgttcctaagc 439
Query: 241 ccttccaatgatcacttggttgcagtgatggttcttctccaaagtatacccttcaatgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccttccaatgatcacttggttgcagtgatggttcttctccaaagtatacccttcaatgta 499
Query: 301 tgtgggatgcagtcttctagtgtacaagaagatatggagtttataatcctatccatgcaa 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtggaatgcagtcttctagtgtacaagaagatatggagtttataatcctatccatgcaa 559
Query: 361 ctatagacttttaaagtccaatttacaaggtatttttacatcataccttatagtatggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctatagacttttaaagtccaatttacaaggtatttttacatcataccttatagtatggta 619
Query: 421 ctaattctattttgcataaaagtgtacaatgcataaatat-acatctttagactgcacat 479
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 620 ctaattctattttgcataaaagtgtacaatgcataaa-attacatctttagactgcacat 678
Query: 480 tcaaagcttttaacaggttatacaccacaaagccagactttgagagattgttgctgtcca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcaaagcttttaacaggttatacaccacaaagccagactttgagagattgttgctgtcca 738
Query: 540 gggtattaagacagataatcatctcagctaccctatcacacagatactttctaaaggcaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gggtattaagacagataatcatctcagctaccctatcacacagatactttctaaaggcaa 798
Query: 600 acataaggataagtggggaaaggattcctgctggatctgtaataaaaatgtatttatggg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 acataaggataagtggggaaaggattcctgctggatctgtaataaaaatgtatttatggg 858
Query: 660 acactataataggtaacattgtacttattatggggccttcaatttatactactaaaacat 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 859 acactataataggtaacattgtacttattatggggcctttaatttatactactaaaacat 918
Query: 720 tttatactccagcttcattatataatacagacatttattgctaaacaatgaacaaactgc 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tttatactccagcttcattatataatacagacatttattgctaaacaatgaacaaactgc 978
Query: 780 atgtgtaaatttgcttactgataaatctatgtttctct 817
||||||||||||||||||||||||||||||||||||||
Sbjct: 979 atgtgtaaatttgcttactgataaatctatgtttctct 1016
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 817
Length of database: 1216
Length adjustment: 10
Effective length of query: 807
Effective length of database: 1206
Effective search space: 973242
Effective search space used: 973242
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_b19.g1 MSMg01no146_b19.g1 CHROMAT_FILE:
MSMg01no146_b19.g1 PHD_FILE: MSMg01no146_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:30 2005
(769 letters)
>mm_chr5_86134454_86135627
Length = 1174
Score = 1158 bits (599), Expect = 0.0
Identities = 713/799 (89%), Gaps = 76/799 (9%)
Strand = Plus / Minus
Query: 1 gaatttcatgtagggaactgattgtcccctgctcagctccaatctccaccagagtagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaatttcatgtagggaactgattgtcccctgctcagctccaatctccaccagagtagagt 699
Query: 61 ttccacaggatttccagattaaaccattgacctttctctcttggttctatcagtttgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttccacaggatttccagattaaaccattgacctttctctcttggttctatcagtttgctg 639
Query: 121 ttgtcttgtggcttgtgacatctagttaactatttcagatccagtgtcatgagaaccaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttgtcttgtggcttgtgacatctagttaactatttcagatccagtgtcatgagaaccaca 579
Query: 181 gaagcttttctcttatattctgtgtaatgagattttctaaatatatccaacagaggcaaa 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaagcttttctcttataatctgtgtaatgagattttctaaatatatccaacagaggcaaa 519
Query: 241 agaaacctcaccgtgcaagaaaacctttaagaacatgccaattttagaactgagaacgaa 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 518 agaaatctcaccgtgcaagaaaacctttaagaacatgccaattttagaactgagaacaaa 459
Query: 301 tacttcatttaaaactatttttgttaagttaaagtgtaaagtaatgtgcttcatggtgtt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 458 tacttcatttaaaactatttttgttaagttaaagtgtaaagtaatgtgcttcattgtgtt 399
Query: 361 tttttatagggttgaaaaatatacttcattatacttcattctaattcttctccctctagt 420
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 398 ttttcatacggttgaaaaatatacttcattatacttcattctaattcttctccctctaat 339
Query: 421 attctctttctcgctgactctatcccaacctgaaatccattctttctctaaggttaaacc 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 338 attctctttctcgctgactctaccccaacctgaaatccattctttctctaaggttaaacc 279
Query: 481 tttattttgtcatttccttagatgttcttattccct-----tcttctcctgctccctctt 535
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 278 tttattttgtcatttccttagatgctcttattccctcaccttcttctcctgctccctctt 219
Query: 536 tagtttgatcatatatata------------------------------catatacatat 565
||||||||||||||||||| |||||||||||
Sbjct: 218 tagtttgatcatatatatatatatatatatatatatatatatatatatacatatacatat 159
Query: 566 atacacatacacacacacacacacacacctccctctcacatttaaatctaagttttgagt 625
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 158 atacacatacacacacacacacacacccctccctctcacatt------------------ 117
Query: 626 atgagaaattaggacattttttcttgaattattttgctttagataataatttctagttcc 685
||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ----------------------cttgaattattttgctttagataataatttctagttcc 79
Query: 686 atcatttttttctgaaaatatgatgatttcatttttatttatgattgagtacaatttcac 745
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 atcatttttt-ctgaaaatatgatgatttcatttttatttatgattgagtacaatttcac 20
Query: 746 tgtgtacatgtgccacatt 764
|||||||||||||||||||
Sbjct: 19 tgtgtacatgtgccacatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1174
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1164
Effective search space: 883476
Effective search space used: 883476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
