Query= MSMg01no146_c11.b1 MSMg01no146_c11.b1 CHROMAT_FILE:
MSMg01no146_c11.b1 PHD_FILE: MSMg01no146_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:35 2005
(808 letters)
>mm_chr5_63694519_63695723
Length = 1205
Score = 1388 bits (718), Expect = 0.0
Identities = 786/810 (97%), Gaps = 8/810 (0%)
Strand = Plus / Plus
Query: 1 gaatcacttaaagaagttttcaacatccatacccatacctggaaatgcaaatccaaaatg 60
|||||| |||||||| ||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 202 gaatcaattaaagaaattttcaacatccatagtca-acctggaaatgcaaatcaaaaatg 260
Query: 61 acatatacacacatgctcatgcacacacacataaggatctaagcaaatgaatgggcttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatacacacatgctcatgcacacacacataaggatctaagcaaatgaatgggcttag 320
Query: 121 ggcagtatcattaaagacattttataaatgaactacatacaaaa-taacaaacaatgttt 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ggcagtatcattaaagacattttataaatgaactacatacaaaagtaacaaacaatgttt 380
Query: 180 tcttctcctagagtggtgatgtcacagatattcagacgttttggaaactatttctgctga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttctcctagagtggtgatgtcacagatattcagacgttttggaaactatttctgctga 440
Query: 240 gataaaatggatgtaatgttgacgtttatcagcccaataccctacaggaatgtgtgtcac 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataaaattgatgtaatgttgacgtttatcagcccaataccctacaggaatgtgtgtcac 500
Query: 300 tgtgagctagccatttgcagatggtc-acaaagtggaccagatgctcctgagctcccaag 358
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgagctagccatttgcagatgg-ctacaaagtggaccagatgctcctgagctcccaac 559
Query: 359 agcctccaccgtactcacacctaccagagcgtggtaaaacaagcagagattctgaactgg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcctccaccgtactcacacctaccagagcgtggtaaaacaagcagagattctgaactgg 619
Query: 419 ttgtgattaagtttctgacactaagctgaagatgtgcttgtgttatgaattaaatgcatt 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 620 ttgtgattaagtttctgacactaagctgaagatatgcttgtgttatgaattaaatgcatt 679
Query: 479 taaagaagaaaggaaagtgaatttcttgctcaccatcactaaacacacaccagttaagag 538
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taaagaagaaaggaaaatgaatttcttgctcaccatcactaaacacacaccagttaagag 739
Query: 539 agagggcttggtaaagaaagtagcaaaacggagtctgaaaacagatgatcaagagaacat 598
|| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 -ga---cttagtagagaaagtagcaaaacggagtctgaaaacagatgatcaagagaacat 795
Query: 599 gaatgcataacttcaaatcttagattatgaacaacgtcttctggttgtatttgcaggaga 658
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 796 gaatgcataacttcaaatcttagattgtgaacaacgtcttctggttgtatttgcaggaga 855
Query: 659 tggaggttcacgtacgtatagcttataatgtgaccaacttaaacaatgttatgtcactga 718
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tggaggttcacatgcgtatagcttataatgtgaccaacttaaacaatgttatgtcactga 915
Query: 719 agtcctcttgagacttttatgacagattgacagattacagctatgaattagaataaatac 778
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 916 agtcctcttgagacttttatgacagattgacagattacagctataaattagaataaatac 975
Query: 779 aaattaatatagaaatagttcctcagtttg 808
|||||||||||||||| |||||||||||||
Sbjct: 976 aaattaatatagaaattgttcctcagtttg 1005
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 808
Length of database: 1205
Length adjustment: 10
Effective length of query: 798
Effective length of database: 1195
Effective search space: 953610
Effective search space used: 953610
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_c11.g1 MSMg01no146_c11.g1 CHROMAT_FILE:
MSMg01no146_c11.g1 PHD_FILE: MSMg01no146_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:35 2005
(776 letters)
>mm_chr5_63821815_63822992
Length = 1178
Score = 1446 bits (748), Expect = 0.0
Identities = 770/778 (98%), Gaps = 2/778 (0%)
Strand = Plus / Minus
Query: 1 gttttcagatgatccttcttgagaact--aacactcacacacagaaagcaaacgagagga 58
||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 978 gttttcagatgatccttcttgagaactaaaacacacacacacagaaagcaaaagagagga 919
Query: 59 tcgaggtttaaagtctccatgttgattcttactccataaatgcattggaacgacagatac 118
|||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||
Sbjct: 918 tcgaggtttaaagtctccatgttggttcttactccataaatgccttggaaggacagatac 859
Query: 119 agattttcctctgagtgctaaaaagcagggctggctgggatcctctctgtcacaagatct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 agattttcctctgagtgctaaaaagcagggctggctgggatcctctctgtcacaagatct 799
Query: 179 gaggtgagatctcagtttgggtaacaatataagaccagactttcaaagaaagctaagttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaggtgagatctcagtttgggtaacaatataagaccagactttcaaagaaagctaagttt 739
Query: 239 tcagggaagccattctagtatttgttatttttataactttgatttggactcattgaatga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tcagggaagccattctagtatttgttatttttataactttgatttggactcattgaatga 679
Query: 299 caaacttctgccgaatgagagattgcaatgtgatgattcatttcaggattttcctgtatt 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 678 caaacttctgccgaatgagagattgcaatgtggtgattcatttcaggattttcctgtatt 619
Query: 359 tgaatggcatcaaggcctcacttttatgacaagtggcttcccaccaagtatgtgccttaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgaatggcatcaaggcctcacttttatgacaagtggcttcccaccaagtatgtgccttaa 559
Query: 419 gcatcaagtgaggaaatctaagattaaaaagcaaaggatagcaatgtcagtgtttgctct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcatcaagtgaggaaatctaagattaaaaagcaaaggatagcaatgtcagtgtttgctct 499
Query: 479 cagcagcgtgccgtgctctgcttcttgtcaaccatctcagttaaatgtcacaggagtggt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cagcagcgtgccgtgctctgcttcttgtcaaccatctcagttaaatgtcacaggagtggt 439
Query: 539 tgaggagtacataggattttactttcattttgaattaataaaagaaaaccaagctgtagc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgaggagtacataggattttactttcattttgaattaataaaagaaaaccaagctgtagc 379
Query: 599 tggtgagtgaacattcccatattcacacagcaaatacatggtgggcctacactgtaaaca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tggtgagtgaacattcccatattcacacagcaaatacatggtgggcctacactgtaaaca 319
Query: 659 gatctgccagccttgaagcttacatgcctaatccctaagccatacttcttaggaaacttc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gatctgccagccttgaagcttacatgcctaatccctaagccatacttcttaggaaacttc 259
Query: 719 ttactgaaacactgagaattctgttttgcatttgctggcctatggcatatgttcgttc 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttactgaaacactgagaattctgttttgcatttgctggcctatggcatatgttcgttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 776
Length of database: 1178
Length adjustment: 10
Effective length of query: 766
Effective length of database: 1168
Effective search space: 894688
Effective search space used: 894688
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
