BAC Information

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BAC

Clone NameMSMg01-146G19
Chromosome5 (Build37)
Map Location 127,698,556 - 127,699,190
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040327
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146G19.T7 (MSMg01no146_g19.b1)MSMg01-146G19.TJ (MSMg01no146_g19.g1)
ACCAG349967AG349968
length1,2481,230
length of high quality
(start - end)
521 (122 - 642)647 (129 - 775)
definitionCHROMAT_FILE: MSMg01no146_g19.b1 PHD_FILE: MSMg01no146_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:11 2005CHROMAT_FILE: MSMg01no146_g19.g1 PHD_FILE: MSMg01no146_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTTTTTNNATCATTTGGCGCTAAGACTCCTATGGGAGAGGATCCGC
GGAATTCACCTTGATTAGAGTCTCTTTAAAATGGCAAGAGAGATCTTTCC
TTCTTTCTTTCTTCCTTTCATTATTGTTATTCCACAATTGTATCTATCAT
CTGTCTTATCTATCAATCATCTACCTATACTGAAATATGATCACACTACA
TCTCCATTTTCCACTCCACCTGCATCTCCCACCATACTCCCCCAACATCT
CCCCCTTCCAACTTCATGGTTTTTTTTTTTAACCTAAGTCCAATTAGTGC
TGTGTATATATGCATGGGTATGGGGCCATCCACACCATTAAAAAAGAATG
TCCCTCTCCCAGCAGCCATCAACTGCCAATGGTTCCTCCTAAAAGGATAG
GTTTTTTTGAGCTCCCTCCTCATCCATGCTGGGATCATTGGCTGGCCTGA
CCTGGTACAGGTCTTGAGCAGGTAACCATGGCAGCTGTGAGTTCATGAGT
GCAGTAGCCATGACCATAAGACAGCTTTTCATAGCTCTCCTCCCATCCTC
TAGCTCTTTCACATTATCTCTCTCTTCTTCTGTGATGTTCCCTGATCCTT
GCCAAGGGCTGGAATATCGATGAAGCCATCTTATATAGGGCTAGGCATTC
AAACGACAAGGGGGGAATCTCATGGACTGTCCTAGGGTTACTCTTGCTGT
GATGAATCAGTTTGACCGATAGCAAGTTGAGTAGAGAGGTTTACTTAGCT
TACACTTCCACAGCTCAGTATTCCTTTGTTTGAAGAATCCAGTAGAGGAT
TTCAAACAGTTTCTTGATCTGTTCTCTAGATTTGTTTGCATAGGCCATAT
AGGCTTGCTTTCTTATTGCCATTGCCCCTCATGATTTTCTCACTCTGCTT
TTCTTTTATGCCCCTTTAATACCATATTTATTTATGTCCCCTCTTCCTTT
TCTCTCTATATTATTAAAAATTCTCTATAGGTTTGTCCCATTTAATCTCT
TATTCTTATGGAATTTCTCTTCTTAATTTTTGCTTCTTTCCTCTCATGTC
TTTTTTTTTTCCTTTTTCTCATTCTCTTTTTTCCTCTCTATTGTATTTTT
TTTCTTTTCTTTCTTCTTTCACTTATTTATTTTCTTATTTTATTTATTCT
TCACTTATACTTTTTCTTAGTCTCTCTCACATTACTCAATATCCCTTTCT
TCTTTCATATTTTATTTTCATCTACTCCTACGTATTCTACTTTTCTTT
NCGTCCCTTTNTNNANAACATGGTAGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAATAGAAGCCTAGNATAGGAA
GCAGAGACAGGACTGAGCCCTTAAAATGGAATCTTCCCCCCCCACCTTAC
TTCCATGACCTGCTTCCTCCAGCAAGACCCTGTTTCCCAAAAGCTCCAGA
ATCTCCCAAAACAACGCCACCCCAGCTGAGGGCTGAGAGCTCAATTCTGA
GCTGCTGAGGTGCATTTCAAAACCAAACCTACTGCATTTCCGGCACATGG
AATTCAGACCTCTGACCATGCGTTTTTAAGATGCTAAAACTGATGTGATT
TGAGATAGCGCATGAGGAAACTAATCCATCATGTCCAGTGCTTATCACCT
ACTGGAGTTTTATGACCCTGACACAATTGAGGTTTCAATCTGTAAAATGG
GAATAAACACAACCACCCACAGGTTCACTGTGATTTCTCACCAAAAGTCC
CTGGTATCTAGTAAATGCTCAATAAATTTCATCTTTGGGTTTCTCTCATT
TCCCCTCAAATACACTAAGTACCATGCTCTGTGTGCAGCAAACATCCCAG
CCCTGAGACTGAAAGTGTCATGTGGCTCACATGTCCTCAAGACACAGCCA
CAGACTGGCAACCTTCCCAGTCTACAGGGAGCATCATTGAAATCCTAACC
AATGTGAAGTCAGTGGGACAGAGGATATCCCATTTGAATGATGGAGCTTC
ATTGTGAAATGATGGGGGCTGCAGCGGGTAACTGTGCTGCCAAAGCTGCC
TAGACTCACAGAGGGGAGCCACTGTGATCTAAGGGGAGGGGATCTGGCTT
TGAACTCTGAATCATATCGTGAAATATAATGTCGGTGTTCTCAATAAGGA
GAAAGCCTTTTGGAGCACTCCCAGAATTACTGTAAAGTCCTCGTTGAGGC
CCCCTGATGTGAAGGTTACTATACGCTTCCCTGTCCCCTGAATGGCCTTT
TTAGAATTGAGGCCTTGCTGTCATAACGGTTTTCCTTCTATTTTATACTT
TTTAACTCTTCCCTTTCTTCAAAATTATTCTCTCCTTAATTTATCTTTTT
TCTCTTCTCATTATTTCTCTCTCCCTTTCATTTTCCGCAATTCACACTTA
TTCTTCTCTTCTTCTCTTTCCCTGATTACTCTTCATTTCAACTCATCTCT
TCCCCTTCTGTTCTTCCTCGTCTCTCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_g19.g1 MSMg01no146_g19.g1 CHROMAT_FILE:
MSMg01no146_g19.g1 PHD_FILE: MSMg01no146_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:11 2005
         (647 letters)



>mm_chr5_127698344_127699390
          Length = 1047

 Score = 1197 bits (619), Expect = 0.0
 Identities = 631/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 13  cccaccttacttccatgacctgcttcctccagcaagaccctgtttcccaaaagctccaga 72
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 cccaccttacttccatgacctgctccctccagcaagaccctgtttcccaaaagctccaga 272

                                                                       
Query: 73  atctcccaaaacaacgccaccccagctgagggctgagagctcaattctgagctgctgagg 132
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 273 atctcccaaaacaacgccaccccagctgagggctgagagctcaactctgagctgctgagg 332

                                                                       
Query: 133 tgcatttcaaaaccaaacctactgcatttccggcacatggaattcagacctctgaccatg 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgcatttcaaaaccaaacctactgcatttccggcacatggaattcagacctctgaccatg 392

                                                                       
Query: 193 cgtttttaagatgctaaaactgatgtgatttgagatagcgcatgaggaaactaatccatc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cgtttttaagatgctaaaactgatgtgatttgagatagcgcatgaggaaactaatccatc 452

                                                                       
Query: 253 atgtccagtgcttatcacctactggagttttatgaccctgacacaattgaggtttcaatc 312
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 453 atgtccagtgcttatcacctactggagtcttaagaccctgacacaattgaggtttcaatc 512

                                                                       
Query: 313 tgtaaaatgggaataaacacaaccacccacaggttcactgtgatttctcaccaaaagtcc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgtaaaatgggaataaacacaaccacccacaggttcactgtgatttctcaccaaaagtcc 572

                                                                       
Query: 373 ctggtatctagtaaatgctcaataaatttcatctttgggtttctctcatttcccctcaaa 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctggtatctagtaaatgctcaataaatttcatctttgggtttctctcatttcccctcaaa 632

                                                                       
Query: 433 tacactaagtaccatgctctgtgtgcagcaaacatcccagccctgagactgaaagtgtca 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tacactaagtaccatgctctgtgtgcagcaaacatcccagccctgagactgaaagtgtca 692

                                                                       
Query: 493 tgtggctcacatgtcctcaagacacagccacagactggcaaccttcccagtctacaggga 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tgtggctcacatgtcctcaagacacagccacagactggcaaccttcccagtctacaggga 752

                                                                       
Query: 553 gcatcattgaaatcctaaccaatgtgaagtcagtgggacagaggatatcccatttgaatg 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gcatcattgaaatcctaaccaatgtgaagtcagtgggacagaggatatcccatttgaatg 812

                                              
Query: 613 atggagcttcattgtgaaatgatgggggctgcagc 647
           |||||||||||||||||||||||||||||||||||
Sbjct: 813 atggagcttcattgtgaaatgatgggggctgcagc 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)