BAC Information

Click to search

BAC

Clone NameMSMg01-146I21
Chromosome5 (Build37)
Map Location 19,545,935 - 19,546,290
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146I21.T7 (MSMg01no146_i21.b1)MSMg01-146I21.TJ (MSMg01no146_i21.g1)
ACCAG350060AG350061
length1,1601,236
length of high quality
(start - end)
651 (125 - 775)649 (127 - 775)
definitionCHROMAT_FILE: MSMg01no146_i21.b1 PHD_FILE: MSMg01no146_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:28 2005CHROMAT_FILE: MSMg01no146_i21.g1 PHD_FILE: MSMg01no146_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGCTTTTTTTNNNNACAATGGGCGCTAAGACTCCTATGGGAGAGGATC
CGCGGAATTCTTTGTCTAGNTCTGTCCCTTATATTACTGGGGTTATTTGA
TTTTCTGGAGTCCACCCTTTTAAGTTCTTTATATCCACTGGATATTTGTC
CCCTATCTGATTTAGTATAGGTAAAGATCCTTTCCCACTCTGTTGGTGGC
CTTTTTGTCTTATTGAAGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTT
CATGATGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTG
TTCTATTAAGGAATTTTTCCCCTGTGCCCATATCTTTGAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATTTTTTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTT
GCATTCTTCTGCATGTTAACAACCAGTTGTGCCAGCACCATTTGTTAAAT
GGTGTCTTTCTTCCACTTGATAGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTAATCCATTGG
TCTATTTGTCTGTCATTATACCAGTACCTTGTAGTTTTTATCACAATTGC
TCTGTAGTAAAGCTTTAGGTCAAGCATGGTGATTCCACCAGAGGTTCTTT
TATCCTTGAGAAGAATTTTTGCTATCCTATGTCTTTTATTATTCCAGATG
AATTTGCAGATTGCTCTTTCTAATTCGTTGAAGAATTGAGTTGGAATTTT
GATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATAGCCCTTT
TTTACATGTTGATCCTGCCCATCCATGAACATGCGAGATCTTTCCCTCTT
CTGAGATCTTCTTTAATTTCTTTCTTCAAAACTTGAAGTTCTTATCATAC
TTATCTTTCATTCCTTAAATAAAGTCCCTCCAAGATATTTATCTTATTTT
CGTTATTGATAAATTGGTTTTTTTCTTTTTTTTTTCACCTTTTTTTTTTT
TCTAATTTCTCTTTATTTTTCTTTTTCCTTTTATCCTTTGTTTTATCCTC
TTTTTTTCACTTCATTTTTCTTTATTCTTTTTTTTTTTTTTTGTATTTCT
ATCTTTTCTT
NCCCGCTTTTTNTNNNATGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGTTCTTTAGGGGAGTAG
CTACTGTTAGACTGTCCACATTCTAGTAGATGGCCCTGCCCTTCATGTAT
AAGTATACATATAAGTAGCATTAAAAGGTTTCTGAGTGTTAAGTAAACAA
ACAAATGTTCTAGTCTGAATAAATATGGCTCAGACACTCTTATATTTGTA
TACTTGGTACCGAGTTGGTGAAATTCTTTGGGAAAGGTTAGGAGGTGTAG
CCTTGTGGAGGAGGTGTGTCACTGAGGGCGAGCATTGAGGTTTAAAAAGC
CTATTCCTGGTTAGTCCTGTCTCTGCTGCATGTTCAGGACCAAGATATAG
GCTCTCATTCTCTGCCCCAGGGCCACGCCTTCCTGTCTGCTGCCATGCTC
CCAACTATGATGGTCATGTCTGAAACTCTAAGCCACAAATAAAATGATTT
GTGGACATTGGTTTGGTGTCCTTTCATAGCAATAAGAAGGTAGCTAACAC
AATCAATCAATCAATCAATCAATCAATCAATCAAGCAAGCAAGCAAGCAA
GCAAGCAAGCAATAATTTGAAAAAATAAAAAATAATCTCAGGTCAAATGA
CTCTGGATGGATGCACAGATTTGGAAGCTTTGAATATTTAAAGGGAAAAA
AATACTTTACAGTCTCAGAAATTTCAACTTCATTATCTGCTTCAGTACAA
TATAACTTATTTAAGCACTATAAAATAAACGTTATCTACAAGGCGTACGT
TGTGAAACTGATTTTTGTTTGTAGTCATTTTTAAACCTTGTTATGTATTA
GGTACAAAAAGAATTTCTTAAAGTCTAGAATTAAATAAACCGCCCAATTA
AAAATGTGTGCCAAGAGTAAGACAGATACCCTTATTTATGAACAATTGTA
ACAGTTGGCCAAATTACCTTCCTATTAATTGGAGCCCTTTTGTCTTTGTT
CTCCCCCTTTGGCCTTGGAATATTTATATAATTTTTTTTCACCCTTTAAA
TCTCTTTATTACTTTCTTTACTTTCTATTAGCCTCCTTCTTTTCTTTTGG
TTTAGCGAAAAAGTTTATCTCCATTTTTGTAATATTTTTCTTGTCATATA
GGTAAAAATCAATCCCTTTATCTCATTTCTTTTTGCTACTATCTTCTCTC
CTTCTACACTTCTTTTTTTATTTTTATATATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_i21.g1 MSMg01no146_i21.g1 CHROMAT_FILE:
MSMg01no146_i21.g1 PHD_FILE: MSMg01no146_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:28 2005
         (649 letters)



>mm_chr5_19545248_19546296
          Length = 1049

 Score =  654 bits (338), Expect = 0.0
 Identities = 354/364 (97%), Gaps = 8/364 (2%)
 Strand = Plus / Minus

                                                                        
Query: 286  ctgccccagggccacgccttcctgtctgctgccatgctcccaactatgatggtcatgtct 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 ctgccccagggccacgccttcctgtctgctgccatgctcccaactatgatggtcatgtct 984

                                                                        
Query: 346  gaaactctaagccacaaataaaatgatttgtggacattggtttggtgtcctttcatagca 405
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 983  gaaactctaagccacaaataaaatgatttgtggacattggcttggtgtcctttcatagca 924

                                                                        
Query: 406  ataagaaggtagctaacacaatcaatcaatcaatcaatcaatcaatcaatcaagcaagca 465
            ||||||||||||||||||        ||||||||||||||||||||||| ||||||||||
Sbjct: 923  ataagaaggtagctaaca--------caatcaatcaatcaatcaatcaagcaagcaagca 872

                                                                        
Query: 466  agcaagcaagcaagcaagcaataatttgaaaaaataaaaaataatctcaggtcaaatgac 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  agcaagcaagcaagcaagcaataatttgaaaaaataaaaaataatctcaggtcaaatgac 812

                                                                        
Query: 526  tctggatggatgcacagatttggaagctttgaatatttaaagggaaaaaaatactttaca 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  tctggatggatgcacagatttggaagctttgaatatttaaagggaaaaaaatactttaca 752

                                                                        
Query: 586  gtctcagaaatttcaacttcattatctgcttcagtacaatataacttatttaagcactat 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  gtctcagaaatttcaacttcattatctgcttcagtacaatataacttatttaagcactat 692

                
Query: 646  aaaa 649
            ||||
Sbjct: 691  aaaa 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)