BAC Information

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BAC

Clone NameMSMg01-146P15
Chromosome5 (Build37)
Map Location 79,206,792 - 79,207,558
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146P15.T7 (MSMg01no146_p15.b1)MSMg01-146P15.TJ (MSMg01no146_p15.g1)
ACCAG350372AG350373
length1,2021,186
length of high quality
(start - end)		166 (118 - 283)766 (90 - 855)
definitionCHROMAT_FILE: MSMg01no146_p15.b1 PHD_FILE: MSMg01no146_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:24 2005CHROMAT_FILE: MSMg01no146_p15.g1 PHD_FILE: MSMg01no146_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTCTTTTNNNAATCATTGCGCGCTAAGACTCCTAAGGGAGAGGATCCG
CGGAATTCTCTATTTAGTTCTGCCCCTTAAATTTACAATTGGGTTATTTG
GGTTGTTGGTGTCCTAATTATTGAATTCTTCGCAAATTTTCCAGCAGGGG
ACCTACCTGCACAGAGGAAAAGAAAGCAGGGGGGAGATAGAAGAAGGGTG
ATGGAAGAGGTTAACAGGAGTTGTCAGTCAATGGGATGTAAATAAGTAAA
AAAATAAAATAAGTAAAAAAAATAAAATTAAAACAAACAAAAAAGCAATC
ACACTTGAACAATTGTTTTGGAGAACTAATTGCAAATACAAAGTCAGTGA
GCATTATCTATCAAATAGCAACAACATGGGAATGATTTTGAGACAGTCAG
CTTTTTTTGTATAATCCCTGCCACACAGAATAGACATAAGATCCATATCT
CCTTGCTGTGTCACCTTGATCCATTTTACATTCTTGTGATATTTATAACA
ACAATTAATTTCTCATTCTATAATACTATATGTATGAACTTTGTCAATGT
CTATTTTAAATACTTCTCATGATATATTTTGGACATCATGATCAACCATT
ATTACTTGACATTTATATGATATAGGATTATTATTGAGCTACTGTAATTC
CTGATATTCTTCGTTTCTGACATTACTATTATTAATCCTCTTGTTATCTT
TTTTATCACCTATTATTTTGACTTTTTATTATTCTACTAACTCCTATTTA
TACTTATTTCGTGCTTTTCCTTTCCCTTTGTATCTTCCTAACTCTCTTTT
TCTTTTGTCTTTTTTTTTTTTTTTTTATTTTTCTTTGCTCTTTATCTTCT
CTCTTATTTTTTTCTATTGCTCTCTCTTTCTTATCTTCTTTCTTTTTTTT
TTTTTTCTATCCTTTTATTTCTTTTTTATTTATTCTTTTATCTTTTCGTC
TCCCTTTATTTCTCTCTCTCCTCTCTCTCATCTTTTATTTTCACTCTTTT
TTTCCTCTATCTCTATTTCCTTTCTTTTTTTCCTCCTCTTCTCCTATTGT
TATCTACTTATTCTTTTTTTTCTTCTCTCTCTCCCTTCTTCTCTTTCCTT
CTTTTCCCCTTTCTTCTCTTTTTCTTTCTCCCTCTTTTATTCTTCCTATT
CTTCCTTTTTTTTTTCTCTTATTTTCTTTCATCTCTTCCTTCTCTTTATT
CG

NCCCACTTTTTTTTTTAACAAGGGAGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACTTTTGGATTGAGATTCATGG
ACACTCTGGGACTCACCAACCATACTTAGAATTATAACCCGTGAAGTCAG
AAACTGTGGGGTGCCCATCCACAGCCATGACCATCATGAGAATGGTGCTC
AATAATATCTAAACACCAAGACAGACATTGAAGTGGGAGAGGACTCTACA
AAGGAATCAAAACGCTAACAATTATTTTTCCCCCATGCAGAGTAGTAAGA
CAACTGGTCTTATCATTTGACAAATGAAGAAAAACATAGTGTTATAAACG
ATAATCTATAAGGATGTATCAGATTTAATTATATATTTAAATGTATAACT
TCATAAATGCATCTGAATATAGGTGATCCACCCTCTAATTTTGACTCATA
CTCAAGATGTCGATTTTTGCTTTTGAGGCTTTCTACCTCCTATATTGAGC
CTTTTGGAAGCCTGTCAACTCAATATTCTTAAGTGTTTAATAAACATCGA
GAAAAACCCATTAGTACATCCTCCAACCAAAAGATTAAGGTGCACTTTGC
CTTAGTACCAGCAAGCTCAACACTGTCTAGGGATCAGGGAATCTATATCC
TTTACCATTCTTTCTTTCATTTTTCAGAGAAATTCCTTCCTTTCTGATGT
TAATTTTCTTTTTCAAGGTATGACATCTTCTGATAGGTGAAAATGAATGA
CAATTTTCTCTGACTTTAGCGTGACTAGGTTGTTAAGATTATAAATGTGC
ATTCCTAGACACTCGAATGTTGTTCACAAATTGAATTTTTGAAGTGCTGG
CAGTGTTCTCTTTGAGGGATTAATCTCCTCTTCAATAGAGATGGAGAGGA
GGAGTCACCCAAAGCAATATTCCACAGACCTTATCACACTTGGTTTTAAA
GCCCTGATTTATCTGTGCGGCAATTTTTCATCCTTGGAAAATAAATATCT
GGTTTGGCAACCAGTTCCCACACTCCCTATAAATTATAAAAATTTTGGTC
CTAGAAATCCTCCAAAAGGGTTTTATCCCTTTTTTTTTGTCTGGCCCCCC
TAATTCTAGGATTTTTTCAATAAAATCCCGTAGTCACAATTTCTTTATTT
TCTTTCTTTCTTTTTTTGTAATCTCGTTATGAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_p15.g1 MSMg01no146_p15.g1 CHROMAT_FILE:
MSMg01no146_p15.g1 PHD_FILE: MSMg01no146_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:25 2005
         (766 letters)



>mm_chr5_79206592_79207758
          Length = 1167

 Score = 1398 bits (723), Expect = 0.0
 Identities = 756/767 (98%), Gaps = 1/767 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagattcatggacactctgggactcaccaaccatacttagaattataacccgtgaagtca 60
           |||||||||||||||||||||||||||||  |||||||||||||||||   |||||||||
Sbjct: 201 gagattcatggacactctgggactcaccaggcatacttagaattataaattgtgaagtca 260

                                                                       
Query: 61  gaaactgtggggtgcccatccacagccatgaccatcatgagaatggtgctcaataatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaactgtggggtgcccatccacagccatgaccatcatgagaatggtgctcaataatatc 320

                                                                       
Query: 121 taaacaccaagacagacattgaagtgggagaggactctacaaaggaatcaaaacgctaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacaccaagacagacattgaagtgggagaggactctacaaaggaatcaaaacgctaac 380

                                                                       
Query: 181 aattattttt-cccccatgcagagtagtaagacaactggtcttatcatttgacaaatgaa 239
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattatttttccccccatgcagagtagtaagacaactggtcttatcatttgacaaatgaa 440

                                                                       
Query: 240 gaaaaacatagtgttataaacgataatctataaggatgtatcagatttaattatatattt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaaacatagtgttataaacgataatctataaggatgtatcagatttaattatatattt 500

                                                                       
Query: 300 aaatgtataacttcataaatgcatctgaatataggtgatccaccctctaattttgactca 359
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgtataacttgataaatgcatctgaatataggtgatccaccctctaattttgactca 560

                                                                       
Query: 360 tactcaagatgtcgatttttgcttttgaggctttctacctcctatattgagccttttgga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactcaagatgtcgatttttgcttttgaggctttctacctcctatattgagccttttgga 620

                                                                       
Query: 420 agcctgtcaactcaatattcttaagtgtttaataaacatcgagaaaaacccattagtaca 479
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcctgtcatctcaatattcttaagtgtttaataaacatcgagaaaaacccattagtaca 680

                                                                       
Query: 480 tcctccaaccaaaagattaaggtgcactttgccttagtaccagcaagctcaacactgtct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tcctccaaccaaaagattaaggtgcactttgccttagtaccagcaagctaaacactgtct 740

                                                                       
Query: 540 agggatcagggaatctatatcctttaccattctttctttcatttttcagagaaattcctt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agggatcagggaatctatatcctttaccattctttctttcatttttcagagaaattcctt 800

                                                                       
Query: 600 cctttctgatgttaattttctttttcaaggtatgacatcttctgataggtgaaaatgaat 659
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 cctttctgatgttaattttctttttcaaggtatgacatcctctgataggtgaaaatgaat 860

                                                                       
Query: 660 gacaattttctctgactttagcgtgactaggttgttaagattataaatgtgcattcctag 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gacaattttctctgactttagcgtgactaggttgttaagattataaatgtgcattcctag 920

                                                          
Query: 720 acactcgaatgttgttcacaaattgaatttttgaagtgctggcagtg 766
           ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 921 acactcgaatgttgttcacaaattggatttttgaagtgctggcagtg 967


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1167
Length adjustment: 10
Effective length of query: 756
Effective length of database: 1157
Effective search space:   874692
Effective search space used:   874692
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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