BAC Information

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BAC

Clone NameMSMg01-147C17
Chromosome5 (Build37)
Map Location 151,249,268 - 151,249,733
singlet/doubletsinglet
Overlap geneFry
Upstream gene4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, LOC100042068
Downstream geneGm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147C17.T7 (MSMg01no147_c17.b1)MSMg01-147C17.TJ (MSMg01no147_c17.g1)
ACCAG350512AG350513
length706718
length of high quality
(start - end)
467 (87 - 553)157 (72 - 228)
definitionCHROMAT_FILE: MSMg01no147_c17.b1 PHD_FILE: MSMg01no147_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:41 2005CHROMAT_FILE: MSMg01no147_c17.g1 PHD_FILE: MSMg01no147_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATTCNNTTCATCTATAATTGCGGCGCTAATACGACTCCTATTTCGACACA
ATCCGCGGAATTCCAGGCCATTCCAGAACTTGTCTCATAAACTAATCAAT
TAAAATTTATGGTGGCTACTCCGGGAACACCAGGAAAATGATGCCTTAAC
GGCTCATGTAGGTTTCTTTAAAACCTTGATAATGTCCAGAAACTGTCCAC
AGTTCGGAGGGCGCTTTCTCCACCATCCTCCCCACAGAGGACATTGATAT
GAGTGACCTCCGACCGGTGCCAGAAAGCCAATAAGTTTTCTGCCATCCTG
AGACCGACCAGAGTCTGATCATAGAACTTCTGGAGCTGCAGGCCCACTTG
CAGGGCGAAGCGGCTGCGCCTGCGGCTGCGCGGTACCATTTTGAGGACAT
TGGCGGGGTGCAGGGGGCTAGGGCTGCGCACGTGCTATCTGTGCAGCCTC
ACTGCTTGGAGGACTTATCCCCGAGAGGCTGCTGTCAGGATGCCTGGGTC
CTTCCTGGCAAGCAGCAGGTAGCAAAGGATGCCGCACTGCATCAGGCCTT
GCTTCGGCCGCCCCAGGATCAGACTGATCTTTTGCTCACCTTCAGTCAGT
CTCCCCCCCCCCCCCCCCCAGGGTCCGTGTTCATGCAGGTCTCTTGGCCC
TGGAAATCTGGCATGTCCCGCCTCGGAGCCTGGGTAACTTTGAACCCCTG
GTAACT
ACTGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGCACAGCACACACATGTATACAAACAA
CATTTAAAAACAGTTATAATGAAATTAAGAGTGGATGTGTGAGAAGTGGT
TGACTAGAGGAGACAGATGATTGAATTAGACAAGTAATAGGTTGAGAAGG
TGAGTGGGGAGTTATTGTAGGTTAGGCGTTCCCCCCCCCACCACATTTGG
CACCGCTAAGATCCCCTGCCCACATGATAAGCTTGACCTCCCTTCCACCC
CTCCCGGCAGGCGCTGACCGTTTTCTTTATCCTTCGACCCCCGAGCTCCA
TATCCCCCTCCCCGTTCCCCCCCCCCCCCCGGCTCCCCCTCCGCCCCTCC
TGTCCCCCCCCCCCCCCCTCCCTTTCCCTCTTCTCCCTCCCCCTCTCCCG
CCCCCCCCTTCCCCCCCTCCCCCCCCCCTGCCTCCCCCCCCTCCCCCCCC
CCCTCTCCCTCCCCTTTCCCCCCCCCCCCGTTCTCCTCCCCCCCCCCCCC
CCTTCCCCCCCACCCGCCCTCCCCCCTCCCCCCCCCTCCCTCCTCCTCTT
CCCCCTCTTCCCCCCCCTCCCTCTCTTCCCCTCCCCCGTCTTCCCCGCCC
CCCCCGCTCTTCCCCCTTCTCTCCCCCCCCTCCTCCCCCTCCTCCTTTTT
CCCCCCCCCCTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_c17.b1 MSMg01no147_c17.b1 CHROMAT_FILE:
MSMg01no147_c17.b1 PHD_FILE: MSMg01no147_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:41 2005
         (467 letters)



>mm_chr5_151249067_151249933
          Length = 867

 Score =  886 bits (458), Expect = 0.0
 Identities = 464/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   taaactaatcaattaaaatttatggtggctactccgggaacaccaggaaaatgatgcctt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taaactaatcaattaaaatttatggtggctactccgggaacaccaggaaaatgatgcctt 261

                                                                       
Query: 62  aacggctcatgtaggtttctttaaaaccttgataatgtccagaaactgtccacagttcgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aacggctcatgtaggtttctttaaaaccttgataatgtccagaaactgtccacagttcgg 321

                                                                       
Query: 122 agggcgctttctccaccatcctccccacagaggacattgatatgagtgacctccgaccgg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agggcgctttctccaccatcctccccacagaggacattgatatgagtgacctccgaccgg 381

                                                                       
Query: 182 tgccagaaagccaataagttttctgccatcctgagaccgaccagagtctgatcatagaac 241
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 382 tgccagaaagccaataagttttctgccatcctgtgaccgaccagagtctgatcatagaac 441

                                                                       
Query: 242 ttctggagctgcaggcccacttgcagggcgaagcggctgcgcctgcggctgcgcggtacc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttctggagctgcaggcccacttgcagggcgaagcggctgcgcctgcggctgcgcggtacc 501

                                                                       
Query: 302 attttgaggacattggcggggtgcagggggctagggctgcgcacgtgctatctgtgcagc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attttgaggacattggcggggtgcagggggctagggctgcgcacgtgctatctgtgcagc 561

                                                                       
Query: 362 ctcactgcttggaggacttatccccgagaggctgctgtcaggatgcctgggtccttcctg 421
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctcactgcttgaaggacttatccccgagaggctgctgtcaggatgcctgggtccttcctg 621

                                                         
Query: 422 gcaagcagcaggtagcaaaggatgccgcactgcatcaggccttgct 467
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcaagcagcaggtagcaaaggatgccgcactgcatcaggccttgct 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)