BAC Information

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BAC

Clone NameMSMg01-147D21
Chromosome5 (Build37)
Map Location 80,180,242 - 80,180,563
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147D21.T7 (MSMg01no147_d21.b1)MSMg01-147D21.TJ (MSMg01no147_d21.g1)
ACCAG350566AG350567
length710728
length of high quality
(start - end)
638 (40 - 677)340 (75 - 414)
definitionCHROMAT_FILE: MSMg01no147_d21.b1 PHD_FILE: MSMg01no147_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:47 2005CHROMAT_FILE: MSMg01no147_d21.g1 PHD_FILE: MSMg01no147_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAAATCCGCGGAATTC
TTTGTTTATCCCTGTATCCAATTTTTTAGTAGGGTTATTTGGTTGTCTGG
ACTCTAACTTCTTGTGCTCATTGTTTATATTGGGTATTAACCTTCTATTG
AATGTAGAATTGGTAAAATTTTTTTCCCAACCTCTTGATTGCCATTTTGT
CATATTGATAGTGTCTTTTGCCTTGCAGAAGCTTGCAACTTAATGAGGTC
CCATTTGTCAATTTTAGATCTTTAGAGCATAGGACATTGGTGTTCTTTTC
ATAAAATTTTCAAACCAAATTTCTGTATGAATATCAATGCTAAAGTACTC
AATAAAATTATTGCATATCAAATGCAAGAACACATCAAAACAATCATCCA
TCATGACCAACCACACTTCATTCCAAGGATACTAGGATGGTTCAATATAT
GCAAATCCATCAACATAATCCACTATATAAACAAACTAAATGAAAATAAC
CATATGATCATCTCCTTAAATACTGAGAAATTATTTGACAAAATTCCATA
TCCCTTCATGGAAAAAGTTTTGAAAAGATCAGGAATTCAAGGTCCATACC
TAAACATAGTAAAAGTAACATACAGCAAACCAGTAGCCAACATCAAAATA
GATGGAGAGAAACTTGAAGCATTCACACAAAAATCAGGGACTAGACAAAG
ATGCCCACTC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATAGAAAATGGCCTGATTACTTCTT
TAAAATGTTCTTGATATGTCCATCAAGAGATCAGTTAATGCATACTATGA
ATGAATAGTATGAATTTTTTCATTCTGAACAGATTAATATATATATTTAC
ACATATTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATC
ACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTACATGAGATCCAACTGT
AAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGAGTGG
GCTGGTACTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAA
GCAAGCCAGTATAGAACACCCCTCCATGGCTTCTGCATCAGCTCCTGCTT
TCTGACCTGCTTGAGTTCCAGTCCTGATTTCCTTTGGTGATGAACAGCAG
TATGGAAGTGTAAGCGGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGA
TCATGAAGTTTGTGCAGGAATAGAAACCCTGACTGAGATATATATATATA
TATATTATAACAGTATGAATGTTAAAAACTGTATATGAGATGTCTGTTCA
TGTTTCAGCTCATATATACATATATCACTTTCTTATACATTTTTACCTTT
ATTAACAGCTTACTGGACATGTGAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_d21.g1 MSMg01no147_d21.g1 CHROMAT_FILE:
MSMg01no147_d21.g1 PHD_FILE: MSMg01no147_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:47 2005
         (340 letters)



>mm_chr5_80180242_80180981
          Length = 740

 Score =  460 bits (238), Expect = e-134
 Identities = 282/322 (87%), Gaps = 40/322 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagaaaatggcctgattacttctttaaaatgttcttgatatgtccatcaagagatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 catagaaaatggcctgattacttctttaaaatgttcttgatatgtccatcaagagatcag 263

                                                                       
Query: 61  ttaatgcatactatgaatgaatagtatgaattttttcattctgaacaga-tta------- 112
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||       
Sbjct: 262 ttaatgcatactatgaatgaatagtatgaattttttcattctgaacagatttatatatat 203

                                                                       
Query: 113 --------------------------------atatatatatttacacatattgtactgg 140
                                           ||||||||||||||||||||||||||||
Sbjct: 202 atatatatatatatatatatatatatatatatatatatatatttacacatattgtactgg 143

                                                                       
Query: 141 ctagttttgtgtcaacttgacacagctggagttatcacagagaaaggagcttcagttgag 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ctagttttgtgtcaacttgacacagctggagttatcacagagaaaggagcttcagttgag 83

                                                                       
Query: 201 gaaatgcctacatgagatccaactgtaaggcattttctcaattagtgatcaagggggaaa 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  gaaatgcctacatgagatccaactgtaaggcattttctcaattagtgatcaagggggaaa 23

                                 
Query: 261 ggccccttgtgagtgggctggt 282
           ||||||||||||||||||||||
Sbjct: 22  ggccccttgtgagtgggctggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)