Query= MSMg01no147_h17.b1 MSMg01no147_h17.b1 CHROMAT_FILE:
MSMg01no147_h17.b1 PHD_FILE: MSMg01no147_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:05 2005
(659 letters)
>mm_chr5_13133541_13134598
Length = 1058
Score = 1176 bits (608), Expect = 0.0
Identities = 642/654 (98%), Gaps = 3/654 (0%)
Strand = Plus / Plus
Query: 7 ggaattctctgttgacg-agtaacagtggattgttacattacttattgtgtaaatctaag 65
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctctgttgatgtagtaacagtggattgttacattacttattgtgtaaatctaag 266
Query: 66 caaaagtatagctatatgaagcataacatagaggacagaattgtaggtcaaatagaggat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caaaagtatagctatatgaagcataacatagaggacagaattgtaggtcaaatagaggat 326
Query: 126 atggagaatgatatttttagccatttcaaaaatattgttctgaaaactatgaacattctt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atggagaatgatatttttagccatttcaaaaatattgttctgaaaactatgaacattctt 386
Query: 186 ttagattattataaaacttgtttggtttaaatagtgtcctttaggtggtgtcctgaacaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttagattattataaaacttgtttggtttaaatagtgtcctttaggtggtgtcctgaacaa 446
Query: 246 caaactcactaaaccttagcccctttactagaaatatgaaaacatgttgtagcaatggag 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaactcactaaaccttagcccctttactagaaatatgaaaacatgttgtagcaatggag 506
Query: 306 tttcctaaatttttaagtttcctaaaattggccagctaataaaatctaccatttttcatg 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 507 tttcctaaatttttaagtttcctaaaattggccagctaataaaatctaccatttatcatg 566
Query: 366 tctacccacacaagctctgtgctttcatccctgaagctcagacacaagcagacacagttg 425
||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 567 tctactcagagaagctctgtgctttcatccctgaagcttagacacaagcagacacagttg 626
Query: 426 tgttaaggtagagaagacactatatgtgaagcctcattttttttttgaaatgtaggcatg 485
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 627 tgttaaggtagagaagacactatatgtgaagcctcatttttttt--gaaatgtaggcatg 684
Query: 486 ttttgtaatgatggattatattcagggaaaccccttactagggttcctaccaaatattta 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttgtaatgatggattatattcagggaaaccccttactagggttcctaccaaatattta 744
Query: 546 ctcttctgcctatcttgattaatttgtagcaggctaagggccactttttatcattggtaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcttctgcctatcttgattaatttgtagcaggctaagggccactttttatcattggtaa 804
Query: 606 attttcctacaaaatatttaatcttattgtttttgttgcaagactttagaagga 659
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 805 attttcctacaaaatatttaatcttattgtttttgttgtaagactttggaagga 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1058
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1048
Effective search space: 680152
Effective search space used: 680152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_h17.g1 MSMg01no147_h17.g1 CHROMAT_FILE:
MSMg01no147_h17.g1 PHD_FILE: MSMg01no147_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:05 2005
(580 letters)
>mm_chr5_13272759_13273738
Length = 980
Score = 1017 bits (526), Expect = 0.0
Identities = 569/587 (96%), Gaps = 8/587 (1%)
Strand = Plus / Minus
Query: 1 caggactgccaggact------acacacacnaaaaaaaaaaaaaaaaaaaaagaaaagaa 54
|||||| ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 852 caggacagccaggactacacacacacacacaaaaaaaaaaaaaaaaaaaaaagaaaagaa 793
Query: 55 agaaagaaatttattttgtcaaaaagctatctgaatggaataaagagattcatgccaaat 114
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 792 agaaagaaattcattttgtc-aaaagctatctgaatggaataaagagattcatgccaaat 734
Query: 115 gagtatagaaagaaatatgtcaacaatgctatgtgcacaataatttatatttgtatttat 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gagtatagaaagaaatatgtcaacaatgctatgtgcacaataatttatatttgtatttat 674
Query: 175 agaaccaaatatggatttataacagaatactactatgtgttcatatctattatccatcta 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agaaccaaatatggatttataacagaatactactatgtgttcatatctattatccatcta 614
Query: 235 tcatcaccattatctgctcaaatagcagtgagagtgcacgcagttctaaagtctatatta 294
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 613 tcatcaccattatctgctcaaatagcagtgagagtgcatgtagttctaaagtctatatta 554
Query: 295 aagcactg-aaaaatataacatttgccctttcagaactcatactttaagaagaggagata 353
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagcactgaaaaaatataacatttgccctttcagaactcatactttaagaagaggagata 494
Query: 354 gattacaataaaggagagaatgtaggaagaaaatgagtgacctgtgttactatcttaatc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gattacaataaaggagagaatgtaggaagaaaatgagtgacctgtgttactatcttaatc 434
Query: 414 taaatgggtagcaagagctgttcctgaagttttctttgcaaactgtatgaaatgaggaag 473
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 433 taaatgagtagcaagagctgttcctgaagttttctttgcaaattgtatgaaatgaggaag 374
Query: 474 ctgaccacagagccactaagcggaagaagaaactaggaaggacaaagtaccacgtatgcc 533
||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctgaccacagagctactaaccagaagaagaaactaggaaggacaaagtaccacgtatgcc 314
Query: 534 tggagttccctaatccaggccaccatctattgattagatctgaggag 580
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tggagttccctaatccaggccaccatctattgattagatctgaggag 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
