Query= MSMg01no147_o22.b1 MSMg01no147_o22.b1 CHROMAT_FILE:
MSMg01no147_o22.b1 PHD_FILE: MSMg01no147_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:40 2005
(641 letters)
>mm_chr5_49287843_49288885
Length = 1043
Score = 1168 bits (604), Expect = 0.0
Identities = 634/652 (97%), Gaps = 15/652 (2%)
Strand = Plus / Minus
Query: 5 ggaattccag-atcctcccttttctagtgctaggtccataaatgtagaccaccatctctt 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaattccagcatcctcccttttctagtgctaggtccataaatgtagaccaccatctctt 626
Query: 64 c-aatatgttgaaatgtatgtttcatttaatgtcttgtgtatttttttttcagtttattt 122
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaatatgttgaaatgtatgtttcatttaatgtcttgtgtatttttttttcagtttattt 566
Query: 123 tgtaggatcaaatacatcttgcacttatgtagtgaaagccttagccccgcatcttgtaga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtaggatcaaatacatcttgcacttatgtagtgaaagccttagccccgcatcttgtaga 506
Query: 183 tcacatatgttcccactgatgctctgtgtgtcagaatgggtcattgcccaataagtggga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcacatatgttcccactgatgctctgtgtgtcagaatgggtcattgcccaataagtggga 446
Query: 243 gaacataacacccagagagcacctaggcaaggggtctggattacattagctttttcaggc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaacataacacccagagagcacctaggcaaggggtctggattacattagctttttcaggc 386
Query: 303 tctgagtgaattctctagcaagactaattttctcctccactgttcatgtaatataaatta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgagtgaattctctagcaagactaattttctcctccactgttcatgtaatataaatta 326
Query: 363 ctcttgccatccacccacttaaccagtaaaaccttcagataattctgtacatctggattt 422
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcttgccattcacccactcaaccagtaaaaccttcagataattctgtacatctggattt 266
Query: 423 ggatctagtctgagctcttgcactggcactaactcctccatgggctccccatttctggt- 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatctagtctgagctcttgcactggcactaactcctccatgggctccccatttctggtg 206
Query: 482 ------------ggctggtaccccctgctgcttcagactgcaagtacaaaataattgcaa 529
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtactttctaaaggctgttaccccctgctgcttcagactgcaagtacaaaataattgcaa 146
Query: 530 ctaacacaacataaacttaagatctctggagtcagacctagataaatccttaggtgggtc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ctaacacaacataaacttaagatctctggagtcagacctagataaatccttaggtgggtc 86
Query: 590 cctactctaacccaacacattctttgttcttcactttacccttataaggatg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 cctactctaacccaacacattctttgttcttcactttacccttataaggatg 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1043
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1033
Effective search space: 651823
Effective search space used: 651823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_o22.g1 MSMg01no147_o22.g1 CHROMAT_FILE:
MSMg01no147_o22.g1 PHD_FILE: MSMg01no147_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:40 2005
(561 letters)
>mm_chr5_49186285_49187245
Length = 961
Score = 1069 bits (553), Expect = 0.0
Identities = 559/561 (99%)
Strand = Plus / Plus
Query: 1 agccacagctaacatcaattatgtttctgtttacaattggtaaggtaagtgaaattggga 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 agccacagctaacatcaattatgtttctatttacaattggtaaggtaagtgaaattggga 260
Query: 61 gtttaccatgaatactttaaagtttatttacttagagtaatgtgctttatatgttttcaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttaccatgaatactttaatgtttatttacttagagtaatgtgctttatatgttttcaa 320
Query: 121 ctgtgccagaaattacgttgatactttatagacttaaaaatatatttctcatcagtacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgccagaaattacgttgatactttatagacttaaaaatatatttctcatcagtacat 380
Query: 181 ctatgaaatgggtactctgttattctgtgagaaaaagagagccaatctcaaatacaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgaaatgggtactctgttattctgtgagaaaaagagagccaatctcaaatacaaaac 440
Query: 241 ttctaattatctgttctgctgcatgagattgtacctgcaaaacttcctgatacagtcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaattatctgttctgctgcatgagattgtacctgcaaaacttcctgatacagtcttc 500
Query: 301 ccattctgtgaggtactgatggccttgtgtgggtgtatttttcactgttctattcttggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattctgtgaggtactgatggccttgtgtgggtgtatttttcactgttctattcttggt 560
Query: 361 aagactgtgcaaaatggggcaactggtcaaccccaattactgttgctgatctttagtggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagactgtgcaaaatggggcaactggtcaaccccaattactgttgctgatctttagtggc 620
Query: 421 aaggaacgatgtcttttagtataaagaaagaacattttaccttcatctgttgccaagaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggaacgatgtcttttagtataaagaaagaacattttaccttcatctgttgccaagaga 680
Query: 481 aatcactggccatggatggcagacacccattgtggaagcagcttttgtcctgtgttttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatcactggccatggatggcagacacccattgtggaagcagcttttgtcctgtgttttct 740
Query: 541 ctagatgagtaatgcaagggt 561
|||||||||||||||||||||
Sbjct: 741 ctagatgagtaatgcaagggt 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
