Query= MSMg01no148_a12.b1 MSMg01no148_a12.b1 CHROMAT_FILE:
MSMg01no148_a12.b1 PHD_FILE: MSMg01no148_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:48 2005
(675 letters)
>mm_chr5_7552500_7553574
Length = 1075
Score = 868 bits (449), Expect = 0.0
Identities = 479/489 (97%)
Strand = Plus / Minus
Query: 5 gaattcactctcacacccgcgcacaatgcttttttactagttcgtattttaagtgttaac 64
||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||
Sbjct: 489 gaattcactctcacacctgcgcacaatgcttgtttactagttagtattttaagttttaaa 430
Query: 65 ggagtataattaaaattttacactttttaatcagttcaataatattttcagaggtaaaat 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggaatataattaaaattttacactttttaatcagttcaataatattttcagaggtaaaat 370
Query: 125 atgcatcctaccagctattcaaagactaagagaatttaaaaataaaatgtaagccaaaac 184
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 369 atgcatcctaccagctattcaaaaactaagagaatttaaaaacaaaatgtaagccaaaac 310
Query: 185 ccaacaagatagtaaaagcataaggcaacctgagactgatgctgtgatccaagcatctgc 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccatcaagatagtaaaagcataaggcaacctgagactgatgctgtgatccaagcatctgc 250
Query: 245 tataggggctagagatttggcccagtggttaagagcacttgtaaagaaccagggtttggt 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tacaggggctagagatttggcccagtggttaagagcacttgtaaagaaccagggtttggt 190
Query: 305 aaccagaacccacttagaggcacaccacctccccaagcactaaacacacatgtggtgcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaccagaacccacttagaggcacaccacctccccaagcactaaacacacatgtggtgcac 130
Query: 365 tgatgtacaagcaggcaaatgaaccatactcaaaaagataataaaaataaatgtagaaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgatgtacaagcaggcaaatgaaccatactcaaaaagataataaaaataaatgtagaaag 70
Query: 425 tctactttaaaagacatttcaattagacatttatgtgagaaaaatggtttctatacccac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tctactttaaaagacatttcaattagacatttatgtgagaaaaatggtttctatacccac 10
Query: 485 aacttgtct 493
|||||||||
Sbjct: 9 aacttgtct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_a12.g1 MSMg01no148_a12.g1 CHROMAT_FILE:
MSMg01no148_a12.g1 PHD_FILE: MSMg01no148_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:48 2005
(613 letters)
>mm_chr5_7448319_7449330
Length = 1012
Score = 1162 bits (601), Expect = 0.0
Identities = 610/613 (99%), Gaps = 1/613 (0%)
Strand = Plus / Plus
Query: 1 agaatagatttaaaatcagacagagaaattaaaaaaaattctggttaaagagcatctatg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 agaatagatttaaaatcagacagagaaattaaaaaaaa-tctggttaaagagcatctatg 259
Query: 61 aggctaaaaacatattagagcataaggaagtcttattcataattagatgtcttgaatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggctaaaaacatattagagcataaggaagtcttattcataattagatgtcttgaatgac 319
Query: 121 tgcaccttcatctgagtaaaggttaataagcaacgggctttttatgtgttttacctgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgcaccttcatctgagtaaaggttaataagcaacgggctttttatgtgttttacctgtca 379
Query: 181 aggtctggaatgactgtcatcgttcaatggagaggtttttaattatgctaaatcaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggtctggaatgactgtcatcgttcaatggagaggtttttaattatgctaaatcaaaaat 439
Query: 241 gcttttatgttgctccctggtcacatattagaggtgacatcaggaactggctttctttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcttttatgttgctccctggtcacatattagaggtgacatcaggaactggctttctttaa 499
Query: 301 tggcagctctagaggttgcctgcttcataatgttttgccaaagcttttactttcctttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggcagctctagaggttgcctgcttcataatgttttgccaaagcttttactttcctttta 559
Query: 361 taaaatttcaccgttttttctttttctttttttaaagcctacagctcctttgcacataga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaaatttcaccgttttttctttttctttttttaaagcctacagctcctttgcacataga 619
Query: 421 ttatggctttgtttttgtaggactcctcagtgtccagacaagtgtatctctgcatcaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatggctttgtttttgtaggactcctcagtgtccagacaagtgtatctctgcatcaata 679
Query: 481 gttgtttcctatgccctttctagggctccttttttgtctggtttgttctagccgggtgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 gttgtttcctatgccctttctagggctccttttttgtctggtttgttctagccaggtgtg 739
Query: 541 tttggttttatttatcttatttttatttggagaaagggaagggaatggggagaatttata 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 740 tttggttttatttatcttatttttatttggagaaagggaagggaagggggagaatttata 799
Query: 601 attatagtatagt 613
|||||||||||||
Sbjct: 800 attatagtatagt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1012
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1002
Effective search space: 604206
Effective search space used: 604206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
