Query= MSMg01no148_d13.b1 MSMg01no148_d13.b1 CHROMAT_FILE:
MSMg01no148_d13.b1 PHD_FILE: MSMg01no148_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:03 2005
(656 letters)
>mm_chr5_135593144_135594199
Length = 1056
Score = 1191 bits (616), Expect = 0.0
Identities = 647/662 (97%), Gaps = 10/662 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaaagccagcctgctg-aacctactgagactatatctcaaaataaaatctataa 62
||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaagtcagcctg-tgtaacctactgagactatatctcaaaataaaatctataa 262
Query: 63 tgtgagcaagagatgtagctcattgatagagtgccagcctagaatcctccagggaggggt 122
||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 263 tgtaagcaagagatgtagctcattgatagagtgtcagcctagaatcccccagggaggggt 322
Query: 123 tagaggtgtggcttagcatggtttagcagtatcacatttgcaaagcatgcaggaggtccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagaggtgtggcttagcatggtttagcagtatcacatttgcaaagcatgcaggaggtccc 382
Query: 183 aggtaatattcagcacaattaataaaccagtcagtaaatatatttgaaaaattaggaagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggtaatattcagcacaattaataaaccagtcagtaaatatatttgaaaaattaggaagc 442
Query: 243 tagaaagccaggtgggcatgacttcccccacctttgagtttctggggactggagagatgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tagaaagccaggtgggcatgacttcccccacctttgagtttctggggactggagagatgg 502
Query: 303 ctcagtggttaagagcacttgttgctcctgtagaggacctgggtttggttcctagcatcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctcagtggttaagagcacttgttgctcctgtagaggacctgggtttggttcctagcatcc 562
Query: 363 acgcagtggctcctaaccatctacaactccattttcaaaggacctgatgccctcttctga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acgcagtggctcctaaccatctacaactccattttcaaaggacctgatgccctcttctga 622
Query: 423 cctccacaggtaccaggcacacacacacacacaca--------aacacacacacggatgg 474
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 623 cctccacaggtaccaggcacacacacacacacacacacacacaaacacacacacggatgg 682
Query: 475 acggaaaacactcaaataaatgaacctttaaaatattttaaatatctaaataggtgattg 534
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 683 acggaaaacactcaaataaatgaacctttgaaatattttaaatatctaaataggtgattg 742
Query: 535 tgggccccagcagaggtggtgtgcacttttactcccagcactcagaaagcagaggcaggc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgggccccagcagaggtggtgtgcacttttactcccagcactcagaaagcagaggcaggc 802
Query: 595 agatcttcgagttcgagaccagcctgatctacatagtgagttcgatgatagccagagcta 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agatcttcgagttcgagaccagcctgatctacatagtgagttcgatgatagccagagcta 862
Query: 655 ca 656
||
Sbjct: 863 ca 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_d13.g1 MSMg01no148_d13.g1 CHROMAT_FILE:
MSMg01no148_d13.g1 PHD_FILE: MSMg01no148_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:03 2005
(659 letters)
>mm_chr5_135674468_135675526
Length = 1059
Score = 611 bits (316), Expect = e-179
Identities = 328/334 (98%), Gaps = 4/334 (1%)
Strand = Plus / Minus
Query: 1 catctaatacatgtcaacatgaatacctattgaaatgttacctcactacttttcttcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 catctaatacatgtcaacatgaatacctattgaaatgttacctcactacttttcttcata 271
Query: 61 ttcttttgccttatgtaaagtgactctgctatcccaaacatacaggtatttttttaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttcttttgccttatgtaaagtgactctgctatcccaaacatacaggtatttttttaaaaa 211
Query: 121 aaatgtttgtgccgggcagtggtggcgcacgcctttaatcccagcacttgggaggcagag 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 210 aaatgtttgtgccgggcagtggtggcgcacgcctttaatcccagcactcgggaggcagag 151
Query: 181 gcaggtggatttctgagttcgaggccaacctggtctacagagtgagttccaggacagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gcaggtggatttctgagttcgaggccaacctggtctacagagtgagttccaggacagcaa 91
Query: 241 gggctacacagataaaccctgtctcgaaaaacaaaaacaaacaaacaaacaaacaaacaa 300
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 90 gggctacacagagaaaccctgtctcgaaaaacaa----aaacaaacaaacaaacaaacaa 35
Query: 301 aatgttagcttcagccaaacatggtagtatatgc 334
||||||||||||||||||||||||||||||||||
Sbjct: 34 aatgttagcttcagccaaacatggtagtatatgc 1
Score = 81.9 bits (42), Expect = 1e-19
Identities = 55/60 (91%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 544 agttcctgaacagccagggctacacagagaaaccctgtctcgaaaaac--aaacaaacaa 601
|||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 106 agttccaggacagcaagggctacacagagaaaccctgtctcgaaaaacaaaaacaaacaa 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
