Query= MSMg01no148_n01.b1 MSMg01no148_n01.b1 CHROMAT_FILE:
MSMg01no148_n01.b1 PHD_FILE: MSMg01no148_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:50 2005
(659 letters)
>mm_chr5_41574163_41575221
Length = 1059
Score = 1033 bits (534), Expect = 0.0
Identities = 588/626 (93%), Gaps = 34/626 (5%)
Strand = Plus / Minus
Query: 68 gaaaatacctaatt-aaaaaaaaagaaatttcaagcttttttgaattataaacaagaaga 126
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 gaaaatacctaattaaaaaaaaaagaaatttcaagcttttttgaattataaacaagaaga 1000
Query: 127 tcatgtttggaagtagaggctagtaatgtgagtgctgaggtggatcattggtgtggatct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 tcatgtttggaagtagaggctagtaatgtgagtgctgaggtggatcattggtgtggatct 940
Query: 187 agcaggtacctagtcagccactgcaatagaagcattgccatctaaa------tgg---aa 237
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 939 agcaggtacctagtcagccactgcaatagaagcattgccatctaaagggaagtgggctaa 880
Query: 238 ga------------------------gggctaagatagatggtatagaactgaggaagaa 273
|| |||||||||||||||||||||||||||||||||
Sbjct: 879 gatagatggtatagaactgaggaagtgggctaagatagatggtatagaactgaggaagat 820
Query: 274 ggttcgtaggtttcataagaaaggactctagatctagatggctgtgaatagcactattct 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ggttcgtaggtttcataagaaaggactctagatctagatggctgtgaatagcactattct 760
Query: 334 tcaagacagaagaacggtaatcccagaaggtgacttggaggtcaccaaggttgttttaaa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tcaagacagaagaacggtaatcccagaaggtgacttggaggtcaccaaggttgttttaaa 700
Query: 394 acaaggaatatgggaaaccattgtcttctgctaacagcatattgattccacctaaaaatt 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 acaaggaatatgggaaaccattgtcttctgctaacagcatattgattccacctaaaaatt 640
Query: 454 ctggcatggaaccaccaagggaatctctctctaaaccttgctgcaggtcaaagggaaaat 513
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctggcgtggaaccaccaagggaatctctctctaaaccttgctgcaggtcaaagggaaaat 580
Query: 514 atccttgaacctttaaataatgaagtttgcctcattggggctttacatgttggagagtga 573
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 579 atccttgaacctttaaataatgaagtttgcctcattgggtctttacatgttggagagtga 520
Query: 574 acattcttccttaatatattccttttttaaaatgaaaatatttattctataccatctcac 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 acattcttccttaatatattccttttttaaaatgaaaatatttattctataccatctcac 460
Query: 634 caccagattttggaatctcataactg 659
||||| ||||||||||||||||||||
Sbjct: 459 caccacattttggaatctcataactg 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_n01.g1 MSMg01no148_n01.g1 CHROMAT_FILE:
MSMg01no148_n01.g1 PHD_FILE: MSMg01no148_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:50 2005
(594 letters)
>mm_chr5_41447847_41448840
Length = 994
Score = 1102 bits (570), Expect = 0.0
Identities = 588/594 (98%)
Strand = Plus / Plus
Query: 1 acagcaagccaggacaggaccagacaagaaggagccagctttctttccttcacagctttt 60
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 acagcaagccagaacaggaccagacaaggaggagccagctttctttccttcacagctttt 260
Query: 61 ctcggttatgatttatctgtaattattatagaaatacctcagttatgattattctttaag 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ctcggttatgatttatctgtaattattatagaaataccttagttatgattattctttaag 320
Query: 121 ttttctcctatcctcaccaaagacttaaaaacctattagattaaaaactatggctatctg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ttttctcctatcctcaccaaagacttaaaaacctattaggttaaaaactatggctatctg 380
Query: 181 cagccttgaataaaacttggaaggaactctcaatgcttattgaatcaaaatacacccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccttgaataaaacttggaaggaactctcaatgcttattgaatcaaaatacacccatg 440
Query: 241 gattcatacctggatattgcttttatgtaattaatatgaagattttttccacgttaccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattcatacctggatattgcttttatgtaattaatatgaagattttttccacgttaccag 500
Query: 301 ttaattttaatttttagggaagctacactttcagagaaatattaagtagagagtgtagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaattttaatttttagggaagctacactttcagagaaatattaagtagagagtgtagtc 560
Query: 361 tctgtgtctgtttgccccacacaagaccagctttattcttcagacatcctccgccaccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgtgtctgtttgccccacacaagaccagctttattcttcagacatcctccgccaccat 620
Query: 421 ggcagatttagttcaatcaatcaatgttcactgagaactctttttttttttaattaggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcagatttagttcaatcaatcaatgttcactgagaactctttttttttttaattaggta 680
Query: 481 ttttcctctttacatttccaatgctatcccaaaagtcccccatacccacccccccaatcc 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 ttttcctctttacatttccaatgctatcccaaaagtccaccatacccacccccccaatcc 740
Query: 541 cctacccatccactccccctttttggccctggcgttcccctgtactggggcata 594
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 cctacccatccactccccctttttggccctggcattcccctgtactggggcata 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
