BAC Information

Click to search

BAC

Clone NameMSMg01-148O06
Chromosome5 (Build37)
Map Location 17,423,291 - 17,423,625
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
Downstream geneGnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148O06.T7 (MSMg01no148_o06.b1)MSMg01-148O06.TJ (MSMg01no148_o06.g1)
ACCAG351761AG351762
length713733
length of high quality
(start - end)
370 (37 - 406)336 (79 - 414)
definitionCHROMAT_FILE: MSMg01no148_o06.b1 PHD_FILE: MSMg01no148_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:56 2005CHROMAT_FILE: MSMg01no148_o06.g1 PHD_FILE: MSMg01no148_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACGACTCCTATATCGAGAGGACCGCGGAATTCCATT
AGAGGCTAGAAAAAATATCCCGGGAACCGACAGGTGGCCTACACAGCTAC
AAAATGAGATCGAATAAACCTCATGCAATATTACATCAAGAATGGTTTCT
CTAGAGTTATTGGGGCCTCTGCTCATCCCAGGACTTGAGCGAGAGTCTCC
CCAGATATGGGGGTCTTTAAATGTCTCCCTTTTCATTTCTGATTTTGTTA
ATTAGGATACTGTCCCTGTGCCCTTTAGTTAGTCTGGCTAAAGGTTTATC
TATCTTTTCTTAAAAAATCATCTCCTGGTTTGGTTGATTCTTTGAATAGT
TCTTTTTGTTTCTACTTGGTTGATTTCAGCCCTGAATTTGATTATTTCCT
GCCATTCACCACTTTTGGGTGAATTTGCTTCTTTTTGTTCTAGAGATTTT
TCAGTGTGCTGTCAAGCTGCTAGTGTGTGCTATCTCTAGTTTCTTTTTGG
AGGCACTCAGAGCTATGAGTTTTCATCGTAGAAATGCTTTCATCGTGTCC
CATAAGTTTGAGTATGTTGTGGCTTAATTTTCATTAAACTCTAATAAGTC
TGTAATTTCTTATTTCTTCCTTGACCAGGTATCATTGAGTAGAGTGTTGT
TTAGTTTCCATGGTAGCGTNGGGTTGTCTACGAGTGTGGGTGTCGGGGGA
TTTGTTTTGTTCT
NCCCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATATTTGAAGAAAGGAGAAA
GCATTCTTTAAAATGTGTAGCCTCGATGTCAAGAATTGTAGATTGAGTCT
ATTTGAGGTGTATCGAGGGAAATCAGGCTAAAGATATATATTATTGGAAT
TACTTTGATTACTAGAGTATGTTTCTTTCAATCTGGCATGGGATATTTGG
TGGAGCAGTAACATTCAATGTTTTATTTAGGTAGTATGGTTCCATAGAAA
AGGATTTTGTTCCTTATCACAGAAAGTAGGCTCAAACTATTTGTTAAAGG
GTGAACATGTCAGTTCCAGTGTGTCCTTCAGTCTTTGTCTGTGAAGGAGG
GTATGGAAATTGTTTTATTCCCCCCCCCCGNGGGCAAGTTCCACAGGAGA
AAGAAGCTGCAGAGACTGAAATAGGTACCCAGTAACTAGCCCCAACCTAC
CATGCCTTGCTGAAAAACTCTTATTATTCTTTTGGAGAGAATACAGGATA
AATTATGTATTTCCCCGATGCGGATTCATAGTTTCTCGCCCTTTGTCCTT
TTCTCTTTCCCCGCTCTCCCTCTTTTTCCTTTCCCTTTCCTTTCTCTCTC
CCCCCTCTTCCCCTCCCTCTCCCTCTTCTTTTTTTTTTCCCCTCCCCCCC
CTCCTTTCCTCCTTTTCCTTCTTCCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_o06.g1 MSMg01no148_o06.g1 CHROMAT_FILE:
MSMg01no148_o06.g1 PHD_FILE: MSMg01no148_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:56 2005
         (336 letters)



>mm_chr5_17423091_17423826
          Length = 736

 Score =  617 bits (319), Expect = 0.0
 Identities = 331/335 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatatttgaagaaaggagaaagcattctttaaaatgtgtagcctcgatgtcaagaattg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 535 agatatttgaagaaaggagaaagcattctttaaaatgtgtagcctcaatgtcaagaattg 476

                                                                       
Query: 61  tagattgagtctatttgaggtgtatcgagggaaatcaggctaaagatatatattattgga 120
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 475 tagattgagtctatttgaggtgtattgagggaaatctggctaaagatatatattattgga 416

                                                                       
Query: 121 attactttgattactagagtatgtttctttcaatctggcatgggatatttggtggagcag 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 415 attactttgattactagagtacgtttctttcaatctggcatgggatatttggtggagcag 356

                                                                       
Query: 181 taacattcaatgttttatttaggtagtatggttccatagaaaaggattttgttccttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taacattcaatgttttatttaggtagtatggttccatagaaaaggattttgttccttatc 296

                                                                       
Query: 241 acagaaagtaggctcaaactatttgttaaagggtgaacatgtcagttccagtgtgtcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 acagaaagtaggctcaaactatttgttaaagggtgaacatgtcagttccagtgtgtcctt 236

                                              
Query: 301 cagtctttgtctgtgaaggagggtatggaaattgt 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 cagtctttgtctgtgaaggagggtatggaaattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)