MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-149A18
Chromosome	5 (Build37)
Map Location	102,897,359 - 102,897,575
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527, LOC625780
Downstream gene	Arhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100040920 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040920
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Nkx6-1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18096 MGI:1206039
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cds1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74596 MGI:1921846
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdfy3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72145 MGI:1096875
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666515 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666515 MGI:3647556
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 1 Protein

name	EG666527 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666527 MGI:3647707
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC625780 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625780
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Arhgap24 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231532 MGI:1922647
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Mapk10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26414 MGI:1346863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC666563 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666563
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	4930429D17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74624 MGI:1921874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100041039 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	1700021F02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75519 MGI:1922769
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041049 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041049
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Ptpn13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19249 MGI:103293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nkx6-1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130385 GeneID:18096 MGI:1206039
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NK6 transcription factor related, locus 1 (Drosophila) transcript_id : NM_144955.2

name	Cds1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328392 GeneID:74596 MGI:1921846
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CDP-diacylglycerol synthase 1 transcript_id : NM_173370.3

name	Wdfy3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930598 GeneID:72145 MGI:1096875
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat and FYVE domain containing 3 transcript_id : NM_172882.2

name	EG666515 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375018 GeneID:666515 MGI:3647556
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 1 Protein product : predicted gene, EG666515 transcript_id : XM_984344.1

name	EG666527 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375020 GeneID:666527 MGI:3647707
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666527 transcript_id : XM_984383.1

name	Arhgap24 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30840989 GeneID:231532 MGI:1922647
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho GTPase activating protein 24 transcript_id : NM_029270.1

name	Arhgap24 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375850 GeneID:231532 MGI:1922647
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho GTPase activating protein 24 transcript_id : NM_146161.2

name	Mapk10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125858478 GeneID:26414 MGI:1346863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase 10 transcript_id : NM_001081567.1

name	Mapk10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125858510 GeneID:26414 MGI:1346863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase 10 transcript_id : NM_009158.2

name	4930429D17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254134 GeneID:74624 MGI:1921874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 4930429D17 gene transcript_id : XM_001477947.1

name	1700021F02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254136 GeneID:75519 MGI:1922769
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700021F02 gene transcript_id : XM_001477958.1

name	LOC100041049 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254054 GeneID:100041049
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : hypothetical protein LOC100041049 transcript_id : XM_001475707.1

name	Ptpn13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134948761 GeneID:19249 MGI:103293
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 13 transcript_id : NM_011204.2

name	Nkx6-1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450629 CCDS:CCDS19471.1 GeneID:18096 MGI:1206039
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IGI] [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0031018 - endocrine pancreas development [Evidence IMP] [Evidence IGI]; GO:0045686 - negative regulation of glial cell differentiation [Evidence IGI]; GO:0045687 - positive regulation of glial cell differentiation [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : Drosophila NK transcription factor related, gene family 6, locus 1 product : homeodomain transcription factor Nkx6.1 protein_id : NP_659204.1

name	Cds1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33186923 CCDS:CCDS19472.1 GeneID:74596 MGI:1921846
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IEA] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0016024 - CDP-diacylglycerol biosynthesis [Evidence ISS]; GO:0008654 - phospholipid biosynthesis [Evidence IEA] codon_start : 1 note : phosphatidate cytidylyltransferase product : CDP-diacylglycerol synthase 1 protein_id : NP_775546.2

name	Wdfy3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930599 CCDS:CCDS19473.1 GeneID:72145 MGI:1096875
definition	GO_component : GO:0005776 - autophagic vacuole [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0044444 - cytoplasmic part [Evidence ISS]; GO:0019898 - extrinsic to membrane [Evidence ISS]; GO:0005635 - nuclear envelope [Evidence ISS] GO_function : GO:0003831 - beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity [Evidence IDA]; GO:0005488 - binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005545 - phosphatidylinositol binding [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : galactosyltransferase 3 beta 1, 4 product : WD repeat and FYVE domain containing 3 protein_id : NP_766470.2

name	EG666515 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375019 GeneID:666515 MGI:3647556
definition	codon_start : 1 product : hypothetical protein protein_id : XP_989438.1

name	EG666527 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375021 GeneID:666527 MGI:3647707
definition	codon_start : 1 product : hypothetical protein protein_id : XP_989477.1

name	Arhgap24 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30840990 CCDS:CCDS19474.1 GeneID:231532 MGI:1922647
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1 product : Rho GTPase activating protein 24 isoform 1 protein_id : NP_083546.1

name	Arhgap24 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122687 CCDS:CCDS19475.1 GeneID:231532 MGI:1922647
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : Rho GTPase activating protein 24 isoform 2 protein_id : NP_666273.1

name	Mapk10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125858479 GeneID:26414 MGI:1346863
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004705 - JUN kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004707 - MAP kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007254 - JNK cascade [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; SAPK/Erk/kinase 2; JNK3 beta1 protein kinase; JNK3 beta2 protein kinase product : mitogen activated protein kinase 10 isoform 2 protein_id : NP_001075036.1

name	Mapk10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125858511 GeneID:26414 MGI:1346863
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004705 - JUN kinase activity [Evidence IDA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0004707 - MAP kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007254 - JNK cascade [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; SAPK/Erk/kinase 2; JNK3 beta1 protein kinase; JNK3 beta2 protein kinase product : mitogen activated protein kinase 10 isoform 1 protein_id : NP_033184.2

name	4930429D17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254135 GeneID:74624 MGI:1921874
definition	codon_start : 1 product : hypothetical protein LOC74624 protein_id : XP_001477997.1

name	1700021F02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254137 GeneID:75519 MGI:1922769
definition	codon_start : 1 product : hypothetical protein LOC75519 protein_id : XP_001478008.1

name	LOC100041049 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254055 GeneID:100041049
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475757.1

name	Ptpn13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134948762 GeneID:19249 MGI:103293
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 note : tyrosine phosphatase product : protein tyrosine phosphatase, non-receptor type 13 protein_id : NP_035334.2

name	LOC100040920 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040920
definition	number : 1 pseudo : _no_value

name	LOC625780 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:625780
definition	number : 2 pseudo : _no_value

name	LOC625780 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:625780
definition	number : 1 pseudo : _no_value

name	LOC666563 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666563
definition	number : 1 pseudo : _no_value

name	LOC666563 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666563
definition	number : 2 pseudo : _no_value

name	LOC100041039 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041039
definition	number : 1 pseudo : _no_value

name	LOC100041039 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041039
definition	number : 2 pseudo : _no_value

name	LOC100041039 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041039
definition	number : 3 pseudo : _no_value

clone name	MSMg01-357I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208M02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-149A18.T7 (MSMg01no149_a18.b1)	MSMg01-149A18.TJ (MSMg01no149_a18.g1)
ACC	AG351875	AG351876
length	682	678
length of high quality (start - end)	600 (72 - 671)	239 (329 - 567)
definition	CHROMAT_FILE: MSMg01no149_a18.b1 PHD_FILE: MSMg01no149_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:09 2005	CHROMAT_FILE: MSMg01no149_a18.g1 PHD_FILE: MSMg01no149_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:10 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NNNTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC CGCGGAATTCAAGGCCTACACCTAAACATGATAAAAGCAATCTACAGCAA ACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCAC TAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAAC ATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAA GGGGATACAAATTGGAAAAGAGGAACTCAAAATATCACTTTTTGCAGGTG CTATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTA AACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAA CAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAA TTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTT GGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAA ATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCC CATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCA AAAGCAATCTACAGATTCAATGCAATCCCCAT	TTTCCACGATGAAGTGGGAGGCCTGGGGGCGCCNTTTTCCTAGCGGGAGG NGAACTATAGAAGTAACAACACCAGCCTATCCTATCCTTGGAGTTCATCT AGTTTCATTTTATCTTTTCTCGCCGCTCAGCCCTGTTTTGTTCATTACTC CAACAATAACCTCCATTTAACACAGAGAACGGAGGATTTCTAGAGATGGC AGTTGCCTCTCACACAAACTGCTTTCATGTTAAAATACTGCCGACTCCAG GATAATTTGCCCAGGATGGCTCTCCCTATAAAACCTGGCTCTAATTCTTT CCTAAATGGTGATGAAGCTCANTTTAGTCTTTTATGTTCCCAGCAGGATG TGGGAACATAACTTCCACCTCAAGACCCAGGAGTATAATTCCAGGGGTGA GTCACTTATTAGAACCACAGCACATGTGATTCACTGAGGCCAAACAGCTG AGAATGGGGCCTGAAAAATAGGCTTCCCTTACCTATTTCTCATGTTTTCT TTAAAGATGAAAAGAAAGGAAGGAGGAAAGGATGAAAGATAGAAAAAAAA AAGAAAGAGAGCGAGAAAGAGAAAAAGAGAAAGTAGAAGCTATCTACTAA TTTCAGTGACAGAGGATGGAGGCCAAAACCCCAGAAGTGGCATATTGTCA TGGCCATTCTTGATTCTTCTGGAAACAA
quality values	Open. Hide. 0 0 0 3 6 6 6 10 8 8 8 13 22 29 30 30 20 18 17 15 11 17 8 8 8 19 19 33 40 41 28 20 20 15 13 9 12 9 12 9 9 9 9 11 11 15 15 11 10 10 16 22 28 33 33 33 33 31 36 30 30 28 26 18 10 8 8 8 6 6 6 17 24 47 30 31 28 28 28 31 47 47 57 57 53 53 53 53 50 50 50 53 47 42 42 42 42 42 47 68 68 51 51 51 51 51 68 68 68 68 50 50 50 50 50 50 50 50 51 68 68 68 57 57 57 57 57 57 57 57 57 57 68 51 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 43 43 39 39 39 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 52 43 43 42 43 52 57 57 68 68 68 68 68 68 68 68 68 57 59 57 57 57 57 57 68 68 59 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 54 57 57 57 57 57 59 57 68 68 68 68 68 68 68 68 43 43 36 36 36 44 44 57 57 57 68 68 57 59 48 48 48 57 57 57 57 57 57 54 57 57 57 54 57 57 57 57 57 57 59 59 59 59 59 48 57 57 57 48 48 48 43 43 48 48 48 48 48 50 50 42 37 37 36 32 31 36 43 43 47 47 41 37 32 31 37 32 39 44 44 44 41 37 43 39 32 32 43 43 47 43 47 47 46 46 39 37 36 35 36 36 39 37 32 29 31 43 43 43 39 39 39 40 43 43 59 47 43 40 40 40 47 47 41 41 37 36 32 15 9 9 9 9 18 14 24 25 25 25 24 25 30 30 17 17 15 17 21 26 26 26 29 30 25 26 32 35 23 19 11 11 11 11 10 13 17 18 29 32 30 27 22 19 22 22 28 28 28 30 33 30 24 23 15 21 15 18 17 28 28 18 12 8 8 8 8 10 8	Open. Hide. 7 7 15 6 6 6 8 8 8 10 9 9 9 9 15 13 8 8 10 13 13 20 12 10 9 9 9 15 18 23 19 18 3 0 3 7 7 6 6 6 6 6 6 6 7 7 6 6 6 3 0 3 18 14 30 30 33 28 21 13 9 9 7 6 6 6 6 6 6 10 6 8 6 6 6 8 13 15 34 39 41 50 50 50 53 53 57 57 57 48 36 42 37 50 50 50 50 50 50 53 53 53 53 42 50 36 36 36 36 57 53 53 44 44 39 34 36 32 25 24 15 11 11 11 11 11 21 21 30 31 31 41 48 48 48 53 57 50 50 50 50 50 53 53 50 57 50 53 50 50 50 47 47 47 51 51 51 68 68 68 68 50 50 50 50 50 53 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 40 40 30 30 38 40 59 68 68 68 68 51 50 50 50 51 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 57 57 59 68 68 68 68 68 68 68 50 50 50 57 57 57 50 57 57 57 53 50 59 59 59 57 57 48 53 44 50 41 37 37 24 23 16 11 10 10 11 13 11 11 18 23 28 37 41 41 47 47 53 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 54 59 59 68 57 57 57 57 48 48 57 59 59 59 57 57 57 57 57 57 57 48 48 48 48 47 47 47 32 34 15 15 9 6 3 0 3 7 6 6 6 6 9 9 27 27 59 59 59 47 47 59 48 53 53 57 57 57 57 50 50 50 53 48 57 57 57 50 39 39 34 34 34 25 25 25 30 23 23 11 11 11 11 11 12 11 9 11 18 25 36 41 48 48 48 48 57 57 59 57 57 48 59 57 53 53 53 53 50 57 57 57 57 57 57 57 48 48 48 59 57 68 48 48 36 36 25 27 27 35 28 28 23 23 32 40 42 48 48 48 48 48 48 48 48 48 50 50 48 57 48 48 48 48 48 48 37 37 30 32 32 39 30 41 28 28 28 34 34 37 37 43 59 59 39 39 40 40 44 48 59 59 48 48 48 57 59 59 59 57 57 57 57 57 48 48 48 48 48 50 50 68 68 57 57 48 48 48 48 57 57 57 59 57 57 57 48 48 48 48 48 47 46 43 43 43 40 40 39 39 37 41 30 25 25 25 27 37 43 41 37 37 36 37 37 41 37 37 31 31 23 17 9 9 9 13 14 24 28 24 24 20 20 20 28 30 32 31 31 35 36 37 39 36 39 39 39 37 17 15 11 11 15 25 37 19 19 16 17 19 22 41 37 39 31 29 24 24 19 19 18 32 27 30 15 16 19 23 27 18 18 18 18 14 17 8 8 8 15 10 14 16 24 24 24 28 28 20 22 19 19 16 16 27 21 21 15 15 19 12 17 23 10 8 10 9 10 10 12 8 8 8 8 8 8 10 10 11 19 22 9 10 8 8 8 11 9 9 9 9 12 21 17 11 9 9 9 11 10 10 11 11 10 10 10 10 19 22 12 14 14 14

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no149_a18.g1 MSMg01no149_a18.g1 CHROMAT_FILE:
MSMg01no149_a18.g1 PHD_FILE: MSMg01no149_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:10 2005
         (239 letters)



>mm_chr5_102897194_102897832
          Length = 639

 Score =  373 bits (193), Expect = e-108
 Identities = 211/217 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttatgttcccagcaggatgtgggaacataacttccacctcaagacccaggagtataa 60
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 382 cttttatgttcccagcaggatgtgggaacataacttccaacttaagacccaggagtataa 323

                                                                       
Query: 61  ttccaggggtgagtcacttattagaaccacagcacatgtgattcactgaggccaaacagc 120
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 ttccaggggtgagtcatttattagaaccacagcacatgtgattcgctgaggccaaacagc 263

                                                                       
Query: 121 tgagaatggggcctgaaaaataggcttcccttacctatttctcatgttttctttaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 tgagaatggggcctgaaaaataggcttcccttacctatttctcatgttttctttaaaaat 203

                                                
Query: 181 gaaaagaaaggaaggaggaaaggatgaaagatagaaa 217
           ||||||||||||||||||||||||||||||| |||||
Sbjct: 202 gaaaagaaaggaaggaggaaaggatgaaagaaagaaa 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information