Query= MSMg01no149_e17.b1 MSMg01no149_e17.b1 CHROMAT_FILE:
MSMg01no149_e17.b1 PHD_FILE: MSMg01no149_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:30 2005
(548 letters)
>mm_chr5_140310688_140311635
Length = 948
Score = 942 bits (487), Expect = 0.0
Identities = 530/549 (96%), Gaps = 10/549 (1%)
Strand = Plus / Minus
Query: 1 actcatcctgtctcaagatagtaaagagagggctgaagatgtagctcagtagtagagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actcatcctgtctcaagatagtaaagagagggctgaagatgtagctcagtagtagagttc 602
Query: 61 ctacctagaatttccccagagaggagcaaggaacatggctccacaatagatcacgtgccc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 601 ctacctagaatttccccagagaggagcaaggaacatggcaccacaatagatcacgcgccc 542
Query: 121 agactcccccagtgaagggctggagggattgatcagtaatagagcctttgcttagttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agactcccccagtgaagggctggagggattgatcagtaatagagcctttgcttagttggc 482
Query: 181 caagcatctgggttcaaactccatcatagtgggtggtggaggtgaccaaacagggctcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caagcatctgggttcaaactccatcatagtgggtggtggaggtgaccaaacagggctcca 422
Query: 241 aagctacagcctgtggcaaggagggggagagacatacatggcgaatatagcatccttctc 300
||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct: 421 aagctacagcctggggcaaggagggggagagacatacatggcga-------atcct--tc 371
Query: 301 tgtcttggaggtagctttccaaggttctagaataattctattgtcttctgagggcctctg 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgtcttggagatagctttccaaggttctagaataattctattgtcttctgagggcctctg 311
Query: 361 ttccctcgtctgtgaaatgagcaaacaataagatgacccaaggtttctatgattgcctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttccctcgtctgtgaaatgagcaaacaataagatgacccaaggtttctatgattgcctca 251
Query: 421 gtcctaagcaaatgtaaacttctgagccatgatcccagccccactttggggg-attctag 479
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 250 gtcctaagcaaatgtaaacttctgagctatgatcccagccccactttgggggaattctag 191
Query: 480 gcagggctcctggagccatgccccagcccctccatatctcctagaggggaaaaagtacat 539
|||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 190 gcagggctcctggagccacgcctcagcccctccatatctcctggaggggaaaaagtacac 131
Query: 540 tgcatttag 548
|||||||||
Sbjct: 130 tgcatttag 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_e17.g1 MSMg01no149_e17.g1 CHROMAT_FILE:
MSMg01no149_e17.g1 PHD_FILE: MSMg01no149_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:31 2005
(504 letters)
>mm_chr5_140160016_140160918
Length = 903
Score = 928 bits (480), Expect = 0.0
Identities = 498/504 (98%), Gaps = 1/504 (0%)
Strand = Plus / Plus
Query: 1 gcagggcctctggggtcatgcctaccaaatggggaacccactaaccctcatgccaactag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagggcctctggggtcatgcctaccaaatggggaacccactaaccctcatgccaactag 260
Query: 61 tgccacccagatcacttgtgtgacagagcttcacacaacattgactgtgggtgggtaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccacccagatcacttgtgtgacagagcttcacacaacattgactgtgggtgggtaggg 320
Query: 121 ccagccttgtctcagatctgaatgactccatttcacagagtcaaagagactgaggctccg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagccttgtctcagatctgaaggactccatttcacagagtcaaagagactgaggctccg 380
Query: 181 ggctggcttgactcagattgtccagcctagtgcaggcctttctggtgctcactcgaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctggcttgactcagattgtccagcctagtgcaggcctttctggtgctcactcgaatgc 440
Query: 241 caggctggtgtaccctggttgtgacacacagtttttggtctccaagaatggaaggattgt 300
|||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 caggctggggtaccctggatgtgacacacagtttt-ggtctccaagaatggaaggattgt 499
Query: 301 tttgctcaggagagggcccttgggagctgagctctggggacagacacagggctctgaagc 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttgctcaggagagggctcttgggagctgagctctggggacagacacagggctctgaagc 559
Query: 361 tgggagtgggttccctgcctctccctgtcacctctcacctccagccctgtcaaacaggtc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 tgggagtgggttccctgcctctccctgtcacctctcacctccagccctgtcaaacaggcc 619
Query: 421 cttggttcatgagacgagcccaggaccatcacctatggtcaatctgtgtggagtccatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttggttcatgagacgagcccaggaccatcacctatggtcaatctgtgtggagtccatgg 679
Query: 481 ccaggtacatgtgtagggtcacag 504
||||||||||||||||||||||||
Sbjct: 680 ccaggtacatgtgtagggtcacag 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
