BAC Information

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BAC

Clone NameMSMg01-149I03
Chromosome5 (Build37)
Map Location 13,479,990 - 13,480,491
singlet/doubletsinglet
Overlap geneSema3a
Upstream geneSema3d, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149I03.T7 (MSMg01no149_i03.b1)MSMg01-149I03.TJ (MSMg01no149_i03.g1)
ACCAG352207AG352208
length711708
length of high quality
(start - end)
519 (76 - 594)508 (75 - 582)
definitionCHROMAT_FILE: MSMg01no149_i03.b1 PHD_FILE: MSMg01no149_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:48 2005CHROMAT_FILE: MSMg01no149_i03.g1 PHD_FILE: MSMg01no149_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGACGCGG
AATTCACATGATAATTATCAAGATGATTTTCTACTTCTACTTTTTCTGGA
TTCTAGAGATTGAGCTTAGGTCATTGGGTTTGCATCATTGGGCATCATAT
CCTTTTTATCCACTTAGCAATCTGACTGAGCCCTGGATTACTAATTTAAA
ATAAGTTATATGAGTTGACTTCAATAACTCAAATTTATTGGTTGATAGAA
ATTGCACTAGCACCCATGTTCTGAGATTCTCTAGTGTATGCTGTTCCCTC
TATACTTATATTAGTTTTCTAAATCATGTCCAGTAGAAATATATTCTCAG
CCATATATGCAATTTTAATTTTTAACTTGTAATTAAAATATAATTATATC
ATTTCCTTCCTTCCATTTTCTTCCCCAATCCTTTCCAAATTCATGACCTT
TTTGTCTTTGATTGTTAATGTGTGTATATGAGGTATGTGTCTCTATGTGT
CTATACGTATATATTTCAGGGCTGACTGCTTGGATTTAGATAACCAATTA
GAAATGCATTTCTGGGAGGGAAAGACCAAATTCCCCCTCTTTCAACAGTC
CTTAGTTTCCTAGATGTTTCGGTTGTCTAAGAGTGGGACCAATTGAGATC
TCTATTTTCTAAATTAGCATGTGTATTGGTATTTGGAACAGAATTTTAGT
CCAGCATCAGC
CCGATGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCGGAGCCACATTTTT
TAATGGGGTTATTTGATTGTCTGGAGTCCACCTTCTTGAGTTCTTCATAT
ATATTGGATATTAATCCCCTATCTGATTTAGGATAGATAAAGACCCTTTC
CCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTTCCTTAC
AGAAGCTATGCAATTTTATGAGGTCCCATTTGTCGATTCTCAATCTTACA
GCACAAGCCATTGCTCTGTTCTATTCAGGAATTTTTCTCCTATGTCCACA
CCATCGAGGCTTTTTCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAG
ATAGGAATGGATCAATTTGCATTCTTCTACATGATAACTGCCAGTTGTGC
CAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTTGC
TCCCTTGTCAAAGATCAAGGGGTTCATTTCTGGGTCTTCAATTTTATTCC
ATTGGTCTACTTCTCTGTTGCTATACCAGTACCATGCAGTTTTTATCACA
ATTGCTCTGTAGTACAGCTTTAGGTCAGACATGGTGATTCCCCCAGAGGT
TCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_i03.b1 MSMg01no149_i03.b1 CHROMAT_FILE:
MSMg01no149_i03.b1 PHD_FILE: MSMg01no149_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:48 2005
         (519 letters)



>mm_chr5_13479773_13480691
          Length = 919

 Score =  893 bits (462), Expect = 0.0
 Identities = 492/502 (98%)
 Strand = Plus / Plus

                                                                       
Query: 18  tttctggattctagagattgagcttaggtcattgggtttgcatcattgggcatcatatcc 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttctggattctagagattgagcttaggtcattgggtttgcatcattgggcatcatatcc 277

                                                                       
Query: 78  tttttatccacttagcaatctgactgagccctggattactaatttaaaataagttatatg 137
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tttttatccacgtagcaatctgactgagccctggattactaatttaaaataagttatatg 337

                                                                       
Query: 138 agttgacttcaataactcaaatttattggttgatagaaattgcactagcacccatgttct 197
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 338 agttgacttcaataactcaaatttattggctgatagaaattgcactagcacccatgttct 397

                                                                       
Query: 198 gagattctctagtgtatgctgttccctctatacttatattagttttctaaatcatgtcca 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gagattctctagtgtatgctgttccctctatacttatattagttttctaaatcatgtcca 457

                                                                       
Query: 258 gtagaaatatattctcagccatatatgcaattttaatttttaacttgtaattaaaatata 317
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 458 gtagaaatatattctaaggcatatatgcaattttaatttttaacttgtaattaaaatatg 517

                                                                       
Query: 318 attatatcatttccttccttccattttcttccccaatcctttccaaattcatgacctttt 377
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 518 attatatcatttccttccttccattttcttccccaatccttttcaaattcatgacctttt 577

                                                                       
Query: 378 tgtctttgattgttaatgtgtgtatatgaggtatgtgtctctatgtgtctatacgtatat 437
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 578 tgtctttgattgttaatgtgtgtatatgaggtatgtgtctgtatgtgtctatacgtatat 637

                                                                       
Query: 438 atttcagggctgactgcttggatttagataaccaattagaaatgcatttctgggagggaa 497
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atttcagggatgactgcttggatttagataaccaattagaaatgcatttctgggagggaa 697

                                 
Query: 498 agaccaaattccccctctttca 519
           ||||| ||| ||||||||||||
Sbjct: 698 agacccaatcccccctctttca 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)