BAC Information

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BAC

Clone NameMSMg01-149K07
Chromosome5 (Build37)
Map Location 150,843,277 - 150,843,517
singlet/doubletsinglet
Overlap geneRxfp2
Upstream geneHmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089
Downstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149K07.T7 (MSMg01no149_k07.b1)MSMg01-149K07.TJ (MSMg01no149_k07.g1)
ACCAG352304AG352305
length714718
length of high quality
(start - end)
244 (73 - 316)200 (69 - 268)
definitionCHROMAT_FILE: MSMg01no149_k07.b1 PHD_FILE: MSMg01no149_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:59 2005CHROMAT_FILE: MSMg01no149_k07.g1 PHD_FILE: MSMg01no149_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATAATTTGCGGCGCTAAACGACTCCTATATTCAGAGATGCGCGGA
ATTCGACTAATATTCCTAAGGGGGGCAGCCGCTTAAACTGAAGAATGTAG
CAGGGCCTAAAGGATTCATCGGCTGTGTGGTGGGGCAGATAAAGAGATTT
GAATTCCCTGTCATAAACAGTTTTTACAGTACTTGGTAGAAAAAGACTCG
TTTACTATTCCTTACAAATTTCTCCTCTTCTCTTAAACATTTTTTTCCTT
CAAACTCTGAGACGTTGCTCACTCCTTCCTGGAGTAAGAAGCTGCCGTGG
TGGGGTGTCTGTTACATACTATTTGATAAGAAAGAAGCCCGATCAGGCCT
CTGGGACAAAAATGAATTATTGCATCTATTGCTCAGTTTAAATTGAGCCC
TCTTCCCGTGGGCGCCCCCTTGTACAGGAGATCGACCTGGCTCATTGGAA
GGTCAGGACTGCACCAGGCCTGAGATTCTATCCTCTTGTTCAGAAGGAGT
TTTCTCCTAAGAGGCCTTCATGGCTACTTTAACATTACTTCTCTCAAAAG
ACCTCACAATTATCTAGGAACCCGGTCAGTGATTAGAACTCCTTTAATAC
ATTTGGTAACTGGCGCCTCTGGATAGGCTGAAGCCCCCTTGAGCCCCAGG
ACCTATCTGGCTTTCAGTTATGAACGAACTGGATATTTTTTCTTGGGCCC
TTTTACCCAAACTG
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGTCTCAATCAATCTTAGGGCTGAGGACTAGATGAGTGGTTT
AACACTTGCTTAGCATATGCAAGGTCATGGGTTTGATTCCTAGCATTGAC
ACACACACACACACACACACACACACACACACACACACACACACACACAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGACAGAGAGAG
ACAGAGAGAGAGACAGATAGACAGAGACAGAGAGACAGAGGGGCAGAGAC
AGAGACAGAGACAGGGAGAGTAATTCTGTACATCAGGTTACACCCCTATG
CAACCTCTCCCTGCGATGCTAATGACTAAGTTTCTGAAACCACCTGGATC
TAGTAGTGTTGGAGCCCCCCCCGGATTTACTTACAGCCTGAAGCCCACTG
GGACAGGATAACTGCCATTTACTGACACCCAGACAGAAGGCAGTTCCGCT
ATCGATCCGACAAACAGCCTTATATTATACCGACCTCCTTATTACGCCCG
TGACTGACTATTTCCACCAATTATCATGCAGCCTGCTTAAGCCCTAAGTC
CCTTAATGGTCTTTGGCCGCCTCTCTTCCTCACCACTGTGCCCTGCCTTG
CCACCATATTACCACGGAACCATTGAGAATTAACCGTCCTGCTTCTCTGA
ACGCGCGTGCCCCCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_k07.b1 MSMg01no149_k07.b1 CHROMAT_FILE:
MSMg01no149_k07.b1 PHD_FILE: MSMg01no149_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:59 2005
         (244 letters)



>mm_chr5_150843076_150843719
          Length = 644

 Score =  404 bits (209), Expect = e-117
 Identities = 233/241 (96%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggcagccgcttaaactgaagaatgtagcagggcctaaaggattcatcggctgtgtggtgg 61
           ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 442 ggcagccacttaaactgaagaatgtagcagggcctcaaggattcatcgggtgtgtggtgg 383

                                                                       
Query: 62  ggcagataaagagatttgaattccctgtcataaacagtttttacagtacttggtagaaaa 121
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 382 ggcagataaagagatttgaattccctgtcataaacagtctttacagtacttagtagaaaa 323

                                                                       
Query: 122 agactcgtttactattccttacaaatttctcctcttctcttaaacatttttttccttcaa 181
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 agactcgtttactattccttacaaatttctcctcttcttttaaacatttttttccttcaa 263

                                                                       
Query: 182 actctgagacgttgctcactccttcctggagtaagaagctgccgtggtggggtgtctgtt 241
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 262 actctgagacgttgctcattccttcctggagtaagaagctgtcgtggtggggtgtctgtt 203

            
Query: 242 a 242
           |
Sbjct: 202 a 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)