Query= MSMg01no149_o17.b1 MSMg01no149_o17.b1 CHROMAT_FILE:
MSMg01no149_o17.b1 PHD_FILE: MSMg01no149_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:20 2005
(657 letters)
>mm_chr5_43572670_43573726
Length = 1057
Score = 1236 bits (639), Expect = 0.0
Identities = 651/655 (99%), Gaps = 2/655 (0%)
Strand = Plus / Minus
Query: 4 gaattcttacttctctgcttg-aaagaatgaaatgattctcactggattgttggccagaa 62
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaattcttacttctctg-ttgcaaagaatgaaatgattctcactggattgttggccagaa 706
Query: 63 gcacatcatgtaaacacttgacagcactctgggcaccattaaaataggacattccatttt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gcacatcatgtaaacacttgacagcactctgggcaccattaaaataggacattccatttt 646
Query: 123 gcctactttccaagccttggtaccgtgcaggaaaagtcattcacttccttcagtgacagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gcctactttccaagccttggtaccgtgcaggaaaagtcattcacttccttcagtgacagg 586
Query: 183 caaacattatagaaccctgcactctggcatggctacaaagagtaaaattctaggcattat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 caaacattatagaaccctgcactctggcatggctacaaagagtaaaattctaggcattat 526
Query: 243 agagagcatctttttttcatttgttttagcaagcattgtttcattttaataacctgtgac 302
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agagagcatcttttttccatttgttttagcaagcattgtttcattttaataacctgtgac 466
Query: 303 aagatgtctagctaacacgaaacacctggtaaacacatcggaaatatcgaaatgcggtta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aagatgtctagctaacacgaaacacctggtaaacacatcggaaatatcgaaatgcggtta 406
Query: 363 ccactcgaaagctctcccaaaacacttggctatctaccctttcagtttacttgtttactt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccactcgaaagctctcccaaaacacttggctatctaccctttcagtttacttgtttactt 346
Query: 423 ttaaattttgtacatgcatacattgcacattgagcccatccaccccgcccccatccttcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttaaattttgtacatgcatacattgcacattgagcccatccaccccgcccccatccttcc 286
Query: 483 tcttaggcagctttctcctcctagatggttttacttcttgtttcgtaccacgtgtacatg 542
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 285 tcttaggcagctttctcctcctagatggttttacttcttgtttcgtatcacgtgtacatg 226
Query: 543 cttgcttttatgtatctacataaaatttaggaaccacaaatgagataaaacatatgtttg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cttgcttttatgtatctacataaaatttaggaaccacaaatgagataaaacatatgtttg 166
Query: 603 tctttgtgaggctgacttaagtcgcttaatataattatctccatttatcttaatg 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tctttgtgaggctgacttaagtcgcttaatataattatctccatttatcttaatg 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_o17.g1 MSMg01no149_o17.g1 CHROMAT_FILE:
MSMg01no149_o17.g1 PHD_FILE: MSMg01no149_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:20 2005
(601 letters)
>mm_chr5_43434339_43435334
Length = 996
Score = 1038 bits (537), Expect = 0.0
Identities = 583/601 (97%), Gaps = 5/601 (0%)
Strand = Plus / Plus
Query: 1 ttaggaatagtctggcttagggccacagtgaagaataaaataactaaaaacacaaacaac 60
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ttaggaacagtctggcttagggccacagtgaagaaaaaaataactaaaaacacaaacaac 260
Query: 61 aacaaaacaacgacaacaacaacaaaaaccactaaaatttacaatacctcccctggttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaacaacgacaacaacaacaaaaaccactaaaatttacaatacctcccctggttct 320
Query: 121 ctgcttacaataaatactctgatttctagccaccaagcaggttattttctccagactttt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctcacaataaatactctgatttctagccaccaagcaggttattttctccagactttt 380
Query: 181 ctatcacctggattccaaagccctatagagaaacgaatgtgtttacctcactcatcttca 240
||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 381 ctatcacctggattccaaagccccatagagaaacaaatgtgtttacctcactcttcttca 440
Query: 241 tagttgcccaccaaagtcatgcccaccaaaaggctggcttgtccaggaagcaaatcaatc 300
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagttgccgagc-----catgcccaccaaaaggctggcttgtccaggaagcaaatcaatc 495
Query: 301 ctaaaggcgggcactcctaaattgcctctcaggacttcccaagcaaagcagtcctcttaa 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctaaaggcgggcactcctaaactgcctctcaggacttcccaagcaaagcagtcctcttaa 555
Query: 361 tatatttggagaaactttggacgctttcagagccagtgctgtagatgttaaagaggaagg 420
|| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 556 catctttggagaaactttggacactttcagagccagtgctgtagaagttaaagaggaagg 615
Query: 421 cgcttgggagaacacccatggagtcctgcccaaactcaactcaagtaaaaacgaacaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cgcttgggagaacacccatggagtcctgcccaaactcaactcaagtaaaaacgaacaagt 675
Query: 481 taaaaacataaaaaacaacaacaaaaactaaaaccaaaaaccacacctacacgatgccac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taaaaacataaaaaacaacaacaaaaactaaaaccaaaaaccacacctacacgatgccac 735
Query: 541 aacaaacactctaccagccaggagagatgaaatgatgtcaatttcttttggtttcttttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aacaaacactctaccagccaggagagatgaaatgatgtcaatttcttttggtttcttttg 795
Query: 601 g 601
|
Sbjct: 796 g 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 996
Length adjustment: 10
Effective length of query: 591
Effective length of database: 986
Effective search space: 582726
Effective search space used: 582726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
