BAC Information

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BAC

Clone NameMSMg01-150C21
Chromosome5 (Build37)
Map Location 62,345,464 - 62,345,714
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666597, EG666610, LOC100041524, G6pd2
Downstream geneLOC100041543, Centd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150C21.T7 (MSMg01no150_c21.b1)MSMg01-150C21.TJ (MSMg01no150_c21.g1)
ACCAG352689AG352690
length764731
length of high quality
(start - end)
333 (33 - 365)544 (78 - 621)
definitionCHROMAT_FILE: MSMg01no150_c21.b1 PHD_FILE: MSMg01no150_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:40 2005CHROMAT_FILE: MSMg01no150_c21.g1 PHD_FILE: MSMg01no150_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGACAT
ACATCACTTTATAATATCATATAATATCATATAATATAATATAATATAAT
ATAATATAATATAATATAATATAATATAATATAATATAATATAATATAAT
ATAATATAATATAATATATTTAATATAATATAAATTGAGCTAAAATGTTA
AGTAAGTTAACTTGTGAGTAGAAGCAGTTAAACTGTACCTTTGTGTTCAG
AAAAACAAGAAATAAAGAAACAGACCCTCTACTGACTGGAGGCCGTCAGT
GAAGATGTTGATTCAATAACTTTTGAGATGGGGAGGAAGAGTGGGATGAG
AAACTGTTGGAAGTACACCAGGGGGAAGAAAATGACTGGACTGGAAAAAA
AACCACCCCCCTATTCAAGAAAGCCCGAGGGACGGAGGAAGGAAGGAACG
AAGGAAGCAAGGCACGCCCTTCCCCCCCCCCCCCCTTTTTCTCCTTTTCC
CCCTTCTCCCCCTCCCCCTTTGCCCTCCCCCCCTCTCCCCCCCTACTGTT
TCCCTTTCGTTGTCCCCCATTCCCTTTTTTCTCTTTTCCCTCCTCCCCCC
TTTTTTCCCCCTCTTCCTCCTCCCATACCCTCCCCCCTTTTTTTCCCCCC
CCCTTCTCCTCCCTTTTTTTCCCCCCCTTTTTTTTTTTTCTCCCCCCCCT
TTTCCCTATCCCCCTTTTTCCCCCCCTCCTTATTTCCCCCCCTCTCCCCC
CTCCCCTCTCTTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAAATATTAAACTAGAAGCT
ATAATATATATGTAAAGGACCAAAACTATAAAAAATATGAAGAAAATAAG
AATATGATAAAACTATAAAATAAAATTTTAAAAAGTTTTGATGTGAAAAT
TTGCGACAAGAAACCTTCAACGATGCCATTGAAATCACTTGTTTCTTAGC
CATCTACTGCTGAGCATACAGCATACCATTAGGAGTAACGGCTTTCTCTA
GGAGGATTCCCTTGAAAAAATTAAATTTTCATTTGTAAGGGGATATAAAT
TAGTGTTAACATCAGGGTTAGAGATGCAGGCACATGTCCACTTCTCCTTT
CATCTATAGGATTCTAGCTGATGCAGACCTGTGAAGACCCTTTGCATGCT
GTCTCAGTCTCAGAGAATTCATACATGTATTGAACCTGTTGATGTAGAGG
ATCTTGTTTTCTCAGTGTCCACTGACTCTACTCTCTCCTCCTCTCTTTCT
GCCTCTTCCTTTGTATCGGTTCTCTCAGTCCAGATGGAAGTTATTTGACA
GAAACATGTACAAATAACCACAGTAACAACAAATACAAATAGATTGGCAT
TTCAAATAGAATGAAAACTAGTGGGATATTCTCTAATACACTGACATAAT
TAAAATAACAGTTTGGAATATTTGTTGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_c21.b1 MSMg01no150_c21.b1 CHROMAT_FILE:
MSMg01no150_c21.b1 PHD_FILE: MSMg01no150_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:40 2005
         (333 letters)



>mm_chr5_62345113_62345845
          Length = 733

 Score =  462 bits (239), Expect = e-134
 Identities = 248/251 (98%)
 Strand = Plus / Minus

                                                                       
Query: 83  tataatataatataatataatataatataatataatataatataatataatatatttaat 142
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tataataccatataatataatataatataatataatataatataatataatatatttaat 543

                                                                       
Query: 143 ataatataaattgagctaaaatgttaagtaagttaacttgtgagtagaagcagttaaact 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ataatataaattgagctaaaatgttaagtaagttaacttgtgagtagaagcagttaaact 483

                                                                       
Query: 203 gtacctttgtgttcagaaaaacaagaaataaagaaacagaccctctactgactggaggcc 262
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 482 gtacctttgtgttcagaaaaacaagaaataaagaaacagaccctctactgtctggaggcc 423

                                                                       
Query: 263 gtcagtgaagatgttgattcaataacttttgagatggggaggaagagtgggatgagaaac 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtcagtgaagatgttgattcaataacttttgagatggggaggaagagtgggatgagaaac 363

                      
Query: 323 tgttggaagta 333
           |||||||||||
Sbjct: 362 tgttggaagta 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)