BAC Information

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BAC

Clone NameMSMg01-150D22
Chromosome5 (Build37)
Map Location 71,744,749 - 71,744,899
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2, LOC635092
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d, Corin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150D22.T7 (MSMg01no150_d22.b1)MSMg01-150D22.TJ (MSMg01no150_d22.g1)
ACCAG352736AG352737
length701704
length of high quality
(start - end)
156 (132 - 287)---
definitionCHROMAT_FILE: MSMg01no150_d22.b1 PHD_FILE: MSMg01no150_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:45 2005CHROMAT_FILE: MSMg01no150_d22.g1 PHD_FILE: MSMg01no150_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTCATXXXXXXXXXXXXXXXXXXGAGTACTAATTCCGAGAAGGCGCGG
AATTCCTTATGCTAGCGACACAAGTGGACACCTAAATGACGATGCCAAGT
AATCTTTCATGAATGTTTGTACCAACAAGATTTCACACCTGGACACAAGA
GCCCTGAACTAAGAATTGTGAGACATCTTATATATGCATTAATACCTAGG
CCAACCCAACAGCTTTGGCTCATTCCCCAACTAGCTCAGAAGTTAATTAT
CCTATTATGTAAAATATTCAATGCCATGCCACAGGGCTAGGTAGATCTCC
TTCAGTGTCATGCAAGCATTTGTCTTTGAATTCGGAACGGATCCTTCAAG
TGGCAGACGTTATATTTGAAATTCTTTCCCTGAACCAGAACTTCCGTCTC
TCGGTTCCATGCCTAAGCCAACGGGCCCTTGGGATATTATTAACAGAGGG
TGCTTTCATACATTGCGGAAGAGATTCTCTCTATACATGTGCATATATGC
ATATGCACTCAGGTCACAAATATTGACAGGGTTATTAAGTTTTGGAGTGA
CAAGTATTAAAAGGAAATATTGGAAACAGTAGGATGGAAAAAAGGACCCT
CGACTATATATCGGTATTATAGATATGGAACAATAAATGAAAGTGAATAA
TAATATGTATTTATAATTAGGCTTCAAAAATCTAATGAAAGAGATACCGG
T
AACGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACCACTTCATTCTTTTT
ACATGGATATGATCTTCAATATTTAATGCCTAACATCTTGATAGATGCTG
CTATTTTTATTGATAAAATAGTATATCTCTCAAGCATTTTTCAAACACTT
CTATTTGATAATCCGACATACTAATGTCAGCTTTGAATTTGAACATCTTA
TTTGTGGAATATTTTAATAATCTTAATGATTTCTACAGCTTTGTGATATG
AAGCTCACTATTTCCCTGATGATATGGGAACATACTTAGAAAGGGCTCAA
GGAACGTCTGAAACTCCGATAGTGAGGATTTCCTGGCTAACATCGTATAC
AAGTACTTATGCCCTAGATAATGTACTTCACAATATACTATGTTTTGTGA
CTTTTCCTGAAAATACTGGACTAATATGTATTCATCCGGCGGACGTGATG
CTGCACAGAGAGAAGGAATAGTTCTACCCAAATCTAGCTTAGTGCAACAC
TGACTTTCTTATATAAAGGATGCGAGACTACTTTTGGAAGCATGAATGGA
GTTATTTACCGAACGCGTGGATAAAGCGGAAATAGGGAAAAAGCCAACTT
AGTCTAAGTGTGAAGGGTCATAAAATCTGCAGCTTCTCAAGAAACTGATA
TCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_d22.b1 MSMg01no150_d22.b1 CHROMAT_FILE:
MSMg01no150_d22.b1 PHD_FILE: MSMg01no150_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:45 2005
         (156 letters)



>mm_chr5_71744545_71745100
          Length = 556

 Score =  277 bits (143), Expect = 3e-79
 Identities = 149/151 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   cacctggacacaagagccctgaactaagaattgtgagacatcttatatatgcattaatac 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cacctgcacacaagagccctgaactaagaattgtgagacatcttatatatgcattaatac 296

                                                                       
Query: 65  ctaggccaacccaacagctttggctcattccccaactagctcagaagttaattatcctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctaggccaacccaacagctttggctcattccccaactagctcagaagttaattatcctat 236

                                          
Query: 125 tatgtaaaatattcaatgccatgccacaggg 155
           ||||||||||| |||||||||||||||||||
Sbjct: 235 tatgtaaaatagtcaatgccatgccacaggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)