BAC Information

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BAC

Clone NameMSMg01-150O10
Chromosome5 (Build37)
Map Location 49,440,031 - 49,440,274
singlet/doubletsinglet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150O10.T7 (MSMg01no150_o10.b1)MSMg01-150O10.TJ (MSMg01no150_o10.g1)
ACCAG353215AG353216
length731743
length of high quality
(start - end)
232 (120 - 351)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no150_o10.b1 PHD_FILE: MSMg01no150_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:34 2005CHROMAT_FILE: MSMg01no150_o10.g1 PHD_FILE: MSMg01no150_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACAGGATCCGCGGAA
TTCCCGAGTATTTCACTGCGTTGGGAGCCCTGTGATTGTGCAGTGAGGGA
AATACAAGGCCCTCAGAACAGAAACTGCCTCATTGTAAATGCTCAGTGAA
GGGTGGTTATACTTCCTTTCTTTCTTTCTTTCTTCTTTTCTTTCTTTTCT
TTTTTAACTGTTTATTGAACCTTTTTATACCCTGATGGCTCTTCTAATTG
CTTTATATCATTTATCTCAATTAAACCAGAAAACTCAATGAGTTGAGCAC
TAACACTGTTCCCAACTCCTGTACAGACAAGAAAGAAAGAGGCATCATCA
GTACAGTTGGAACTCTGAAGAAAATGTCTTGTTTTTGCAAGCTCATAAGA
TTTACCATCATTTCCAACAGAGCCATATGAGAACAATTTGCACTGTCACA
TACAGAGAAACATTATGTGCTGCTGGCAAGATGACTTAACGCCTGAAGTG
ATTGAAGAACCCATATACACCTGTACCTTTGTAATCCCCCCACTCCTCCC
TGCACCGTGGAAGCTGATACAGCACACATCCCCGTACCACCATGAATCCC
CTATCCTGCCTGACCCAACCGAACCCAATCGAGAGATTCTTGCTCCACAC
AAGGCGTAACATAAGTATTGACCAACCAGATCATCTTATTCCCTTGAATT
ACCCACAAACATGCGTGCCTTACCTTCCCTG
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACACCAGATATTCTAAAATATGTAT
GATATGTGGTTTTTATTTTAAAAGTGAGGAGATTCAATTGCAGTGCAGGA
CAAAGGGTGAAATTTAAGGATCCTAATGAGTGGATGATAGGGAAAGGAAG
AGTAGGAAAGGCATTGTGGAATCCAATCCTTGGTACAGAGAAGCAGGGGA
ATTAGTAGTTCAAGGACATCATTGTCTAATTAAGTTCTTGGACAGTCTGG
GCTACCTGAGTCCTGGCCACTGATTAGGCAAAACTAACTAACCAAACAAA
ATCATTGTAAGAAAGAGCAGAAGGATAACTGTGACATATAATAGGGATTG
TTTAAATTAAGTACAAAACCACTATGACAGTACTAAACATTTTATAAACG
CACCAGGCGTGGCGCAAAAAAGCTAGCGCCCTAGCCAAATTGTTTTTGAT
AGTCTTGATACTGATTGCACATGTCATACTATAACACCGTGTTTGCACAC
TTACACCCCGAGTCTTTTTTTGTCTGACCCGCGTACCATTCTTCCAATAT
TCTAAACACCGCCATATCCGCTAGGACTTATGCTCCTCGTTTTGATCCAC
CTCGCCTTGTTTTGCAAGGTCTTGCCCCTTGAAATTTACGACCGCGCTCT
GCTCTCGCGAAATATTTCCATTTGTCTAAGCATCCTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_o10.g1 MSMg01no150_o10.g1 CHROMAT_FILE:
MSMg01no150_o10.g1 PHD_FILE: MSMg01no150_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:35 2005
         (244 letters)



>mm_chr5_49439935_49440578
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 237/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccagatattctaaaatatgtatgatatgtggtttttattttaaaagtgaggagattca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 340 caccagatattctaaaatatgtatggtatgtggtttttattttaaaagtgaggagattca 281

                                                                       
Query: 61  attgcagtgcaggacaaagggtgaaatttaaggatcctaatgagtggatgatagggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attgcagtgcaggacaaagggtgaaatttaaggatcctaatgagtggatgatagggaaag 221

                                                                       
Query: 121 gaagagtaggaaaggcattgtggaatccaatccttggtacagagaagcaggggaattagt 180
           |||||||||||||||||||||| ||||||| |||||| | ||||| ||||||||||||||
Sbjct: 220 gaagagtaggaaaggcattgtgcaatccaagccttggcatagagaggcaggggaattagt 161

                                                                       
Query: 181 agttcaaggacatcattgtctaattaagttcttggacagtctgggctacctgagtcctgg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 agttcaagggcatcattgtctaattaagttcttggacagtctgggctacctgagtcctgg 101

               
Query: 241 ccac 244
           ||||
Sbjct: 100 ccac 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)