Query= MSMg01no150_o11.b1 MSMg01no150_o11.b1 CHROMAT_FILE:
MSMg01no150_o11.b1 PHD_FILE: MSMg01no150_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:35 2005
(588 letters)
>mm_chr5_142531248_142532235
Length = 988
Score = 1104 bits (571), Expect = 0.0
Identities = 580/583 (99%)
Strand = Plus / Plus
Query: 4 ggaattcagcctcctctcttccctcagtgacagttactccacatctgttcatttcctggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcctcctctcttccctcagtgacagttactccacatctgttcatttcctggt 263
Query: 64 agctccctctatcttttcctgcagttgaactggtctccccagatcttacctgctataaat 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggctccctctatcttttcctgcagttgaactggtctccccagatcttacctgctataaat 323
Query: 124 tatttaaccagtcctctatgttggacatgtggtttctaccactgctatcaacaaactgac 183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatttagccagtcctctatgttggacatgtggtttctaccactgctatcaacaaactgac 383
Query: 184 aaacacagagtgcatacacaatacaaacatatatgtgcaattaaagttctgcatgtcgta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaacacagagtgcatacacaatacaaacatatatgtgcaattaaagttctgcatgtcgta 443
Query: 244 agtctagtgtgggtttcatagctaatgcatggtgtccatagggcagcaccctctccagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtctagtgtgggtttcatagctaatgcatggtgtccatagggcagcaccctctccagag 503
Query: 304 actctagcaaggagctgattctgtgattattaatgcaaaggtagaaatcagttctgtgtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actctagcaaggagctgattctgtgattattaatgcaaaggtagaaatcagttctgtgtt 563
Query: 364 gaaagtctgaggtttggtatgtggaaagctatgggtcagcagggtgattctagctgctga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaagtctgaggtttggtatgtggaaagctatgggtcagcagggtgattctagctgctga 623
Query: 424 ggtctccttgttgggtgtcttcccatcttgaaggtaagctacagaaaagtgactcatctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggtctccttgttgggtgtcttcccatcttgaaggtaagctacagaaaagtgactcatctt 683
Query: 484 caggcttggcatctccttgtgtttggtctcacctcactgaccctcttccactgctttgta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caggcttggcatctccttgtgtttggtctcacctcactgaccctcttccactgctttgta 743
Query: 544 tccctgtgatggctttgggccaaataatctcactattttatct 586
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cccctgtgatggctttgggccaaataatctcactattttatct 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_o11.g1 MSMg01no150_o11.g1 CHROMAT_FILE:
MSMg01no150_o11.g1 PHD_FILE: MSMg01no150_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:35 2005
(307 letters)
>mm_chr5_142623536_142624242
Length = 707
Score = 462 bits (239), Expect = e-134
Identities = 279/307 (90%), Gaps = 24/307 (7%)
Strand = Plus / Minus
Query: 1 tccccaggatagatgtggagcaaagggaagtgacttgggacctgggactgatgtgtattg 60
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 425 tccccaggatagatgtggagcaaagggaagtgagttgggacctggaactgatgtgtattg 366
Query: 61 tttgaggcacagaagagctgcctctggcatggtggttggggagcaggtgacattgaaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tttgaggcacagaagagctgcctctggcatggtggttggggagcaggtgacattgaaggc 306
Query: 121 agcaagtacttccagggacactgtagcatgggcaggcaggcagtcttagtagtcccaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcaagtacttccagggacactgtagcatgggcaggcaggcagtcttagtagtcccaaga 246
Query: 181 gaggggtccgggggagtcagacatgggtttcttcaggaggggtgtacacacacacacaca 240
|||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 245 gaggggtccgggggagtcagacatgggtttcttcaggaggggtgtata------------ 198
Query: 241 cacactctctcacacacacacacacacacacacacacacggctggtatataggtttcttc 300
| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 197 -----t-------acacacacacacacacagacacacacggctggtatataggtttcttc 150
Query: 301 ccttagt 307
|||||||
Sbjct: 149 ccttagt 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
