BAC Information

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BAC

Clone NameMSMg01-150P22
Chromosome5 (Build37)
Map Location 80,930,659 - 80,930,763
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150P22.T7 (MSMg01no150_p22.b1)MSMg01-150P22.TJ (MSMg01no150_p22.g1)
ACCAG353282AG353283
length748707
length of high quality
(start - end)
109 (74 - 182)371 (78 - 448)
definitionCHROMAT_FILE: MSMg01no150_p22.b1 PHD_FILE: MSMg01no150_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:42 2005CHROMAT_FILE: MSMg01no150_p22.g1 PHD_FILE: MSMg01no150_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGCATCCG
CGGAATTCCTGGAAACCCCATCGAGATACCTGAAAGAACTTGAGTGAACA
ACAAAATTACCTTGTTACCTAAGTCAAATCAATGTATACCTTCATGAAAT
AAGCAAACAAATGAAAAAAGAGGAGGAGAGCANGACCNCAAANAATAAAA
CCACCATTAAGAAGCAAAACCAAACCGCACCCACTATATCCCACTCCCCC
CCTCCTTGCCCCCCGACCGGAAATCACAACTACAAAAAACCCCAAACTCA
ACCAAACTCCACCCCAACCCCACTTTAAACAAGAAACAAAAAAGACAAAA
ACAAAAGACAAAAGCAAAAACAGCAAACCCGCAACACAGCAACCGTGTAA
CCCCAAGACCCCAGTAACCCAAACCCCCCCCCAAACCCAAAAAACCAGTG
CCGCCCCCGGGACCAACCTCACAACCGATACCCAAAAATACCCACACCGA
ACACAAAGGAACCAAAAAAAACCTACATATAAACACATACATCTAAACAA
CATAGCTAANAACGCTCAATACCCAAGGTGCCCCACTCCCCCCCTTCATT
TCCATATCCCCTCGCCATCCCGCCGTACCCCCCCCCCTTTACAACCCCCC
CAGACCCTCCTTTCCCCCCCTTCACCCCCGGCCACCCCCACAGAATACAA
ATTAATCACCCTCTCCCTCTGTCCAACCGATCCACTAAAAACCAGAAG
NAACGATGAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAGATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGGACTACCGGAGGAT
CCAGGAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGGCA
GAACCTGGAGAGAGCCCAGATGCCCCTCAACAAAGGAATGGGTACAGAAA
ATGCGGTACATCTACACAATGGAGTACTACGCAGGTATTAGAAAGAATGA
AGTTATGAAATTCCTAGGCATGAAGCAGGANGTGGAAGGCATCAACAAGA
GAGAGGAAGGGGATAAGTGGAAAACTCTCTCAATATGTACTCCCAGCCCC
GTGCGTCTTATGTCCTAACATAAGATACTCAGGGAACAACACCCACCCAC
AAAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_p22.b1 MSMg01no150_p22.b1 CHROMAT_FILE:
MSMg01no150_p22.b1 PHD_FILE: MSMg01no150_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:42 2005
         (109 letters)



>mm_chr5_80930459_80930967
          Length = 509

 Score =  188 bits (97), Expect = 1e-52
 Identities = 103/105 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatacctgaaagaacttgagtgaacaacaaaattaccttgttacctaagtcaaatcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agatacctgaaagaacttgagtgaacaacaaaattaccttgttacttaagtcaaatcaat 260

                                                        
Query: 61  gtataccttcatgaaataagcaaacaaatgaaaaaagaggaggag 105
           |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gtataccttcatgaaataagaaaacaaatgaaaaaagaggaggag 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)