BAC Information

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BAC

Clone NameMSMg01-151C09
Chromosome5 (Build37)
Map Location 96,802,087 - 96,973,558
singlet/doubletdoublet
Overlap geneFras1
Upstream geneEG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
Downstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151C09.T7 (MSMg01no151_c09.b1)MSMg01-151C09.TJ (MSMg01no151_c09.g1)
ACCAG353393AG353394
length745717
length of high quality
(start - end)
104 (174 - 277)540 (79 - 618)
definitionCHROMAT_FILE: MSMg01no151_c09.b1 PHD_FILE: MSMg01no151_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:53 2005CHROMAT_FILE: MSMg01no151_c09.g1 PHD_FILE: MSMg01no151_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,802,087 - 96,802,190)(96,973,019 - 96,973,558)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCAAGTACTACTGCCGTGCTTTAGAACATGGGCCTTCCCTATGATCGTC
AGCAATATTGCAGTCTACTAAGATCCCTGTCCACCACCCTGAATAGCTCG
GTGTTCACTGTCACTTCAAATTTCTTTCTGGACAGTCTAGCTGTCATAGC
TCTGCCAAGACAGAGAATCTTTTCTGTCTGGCCTTCGAAACCCAGTCTGT
ATCTCTCCCGTGTAACCATCCCCAGTTACAAAATGATCAAACCTGCACCA
GCTATCTTTATTTAGTCCTCTATTAATAGTTATCATTCACCACTGGCTGG
AAACCACATTTTTTTTCTATCCCTCCCCTACCTCTATGCGTGCACACCAG
CATGCCTTTGCCCCCCCCCTGGCTCACCAGACTTTCATACTTCCATCCGC
CACCTGCATTTACCCCCATTCCCCCCCGCCTTCCCCCCTTTACCACTTTT
TCCTCCCTTTTCCCCCTTCCCCTCTTATCTCCTTCCCCTTTCCCTTTCCC
CCTGCCTTCTTTTTCTCCCCCCTTCCTTTTTTTTCCCCCCCCCTTTCCCC
CCTTCCCCCCTTTGCCCCCTCCTCCCTTCCCCCTTCCTATTCCCTTCCCT
CCCTATCATCCCCTCCCCACCTTTTCCCCCCCTTTTCCCCCCTTTTCCCC
CCTTTCCTTCCCATCTTTTCCCCCTCCCCTTTCCCTTCCCCTTTT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACATACAGAGAGACCATAG
ATGCAAAGGAAGAGCTTTCTTTACTTTTTGAACAGGAAATGAATTTTCAC
CAGTTAGAGAGCTTCTCCTAAATGATGCGCTAATCTCTTGAGGCAAAAGG
CCTTGAATATGCCTTTTGCACAAAGGACCAATGAAAAATGCCTAAGATCT
AAGAGGGTTCCCCAGAAACTGGGGCATCACACACCCTGTGCTATCTCCAC
TTGGCTGCTCATAGATTTTCACATTGAGGGTTATTTTGCTCAGAGCAGTG
GACTGTGCTCATATCAGCTGGCTGGCGAGTTCTGAAATGCATACGGCAAA
TATTCTACTTCCATGATTTTGTATACTTTGAAAGCTGTGGCATCTCTATA
ACAAAACTCTGCAGAGGTGGAAAGAAACCAGGGGGATTGTTTTGAAAGGG
AAAAGATGAGAGCATGGGTTCCAATTGACACTGAATAAAAGAAGTATTCT
AATCATTACATGCCAGCAGAGAGCACGAGGGGGTGCTGCTCATTCCTACT
TCTAATAAAGTCCATAGTATTAGCTATCAAATCCCCTCACGCTGCCTGCC
TCTAAACTGTGATGAAACGGATGCATCTGGTTCCAACGACCAGTCTACCC
AACCTGCTCCTGCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_c09.b1 MSMg01no151_c09.b1 CHROMAT_FILE:
MSMg01no151_c09.b1 PHD_FILE: MSMg01no151_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:53 2005
         (104 letters)



>mm_chr5_96801887_96802390
          Length = 504

 Score =  194 bits (100), Expect = 2e-54
 Identities = 103/104 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctggacagtctagctgtcatagctctgccaagacagagaatcttttctgtctggcc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctggacagtctagctgtcacagctctgccaagacagagaatcttttctgtctggcc 260

                                                       
Query: 61  ttcgaaacccagtctgtatctctcccgtgtaaccatccccagtt 104
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcgaaacccagtctgtatctctcccgtgtaaccatccccagtt 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space:    47616
Effective search space used:    47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no151_c09.g1 MSMg01no151_c09.g1 CHROMAT_FILE:
MSMg01no151_c09.g1 PHD_FILE: MSMg01no151_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:53 2005
         (540 letters)



>mm_chr5_96972819_96973758
          Length = 940

 Score = 1029 bits (532), Expect = 0.0
 Identities = 538/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacatacagagagaccatagatgcaaaggaagagctttctttactttttgaacaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttcacatacagagagaccatagatgcaaaggaagagctttctttactttttgaacaggaa 681

                                                                       
Query: 61  atgaattttcaccagttagagagcttctcctaaatgatgcgctaatctcttgaggcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgaattttcaccagttagagagcttctcctaaatgatgcgctaatctcttgaggcaaaa 621

                                                                       
Query: 121 ggccttgaatatgccttttgcacaaaggaccaatgaaaaatgcctaagatctaagagggt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 620 ggccttgaatatgccttttgcacaaaggaccaatgaaaaacgcctaagatctaagagggt 561

                                                                       
Query: 181 tccccagaaactggggcatcacacaccctgtgctatctccacttggctgctcatagattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccccagaaactggggcatcacacaccctgtgctatctccacttggctgctcatagattt 501

                                                                       
Query: 241 tcacattgagggttattttgctcagagcagtggactgtgctcatatcagctggctggcga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcacattgagggttattttgctcagagcagtggactgtgctcatatcagctggctggcga 441

                                                                       
Query: 301 gttctgaaatgcatacggcaaatattctacttccatgattttgtatactttgaaagctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttctgaaatgcatacggcaaatattctacttccatgattttgtatactttgaaagctgt 381

                                                                       
Query: 361 ggcatctctataacaaaactctgcagaggtggaaagaaaccagggggattgttttgaaag 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggcatctctataacaaagctctgcagaggtggaaagaaaccagggggattgttttgaaag 321

                                                                       
Query: 421 ggaaaagatgagagcatgggttccaattgacactgaataaaagaagtattctaatcatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaaaagatgagagcatgggttccaattgacactgaataaaagaagtattctaatcatta 261

                                                                       
Query: 481 catgccagcagagagcacgagggggtgctgctcattcctacttctaataaagtccatagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catgccagcagagagcacgagggggtgctgctcattcctacttctaataaagtccatagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)