BAC Information

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BAC

Clone NameMSMg01-151C13
Chromosome5 (Build37)
Map Location 7,581,215 - 7,581,688
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151C13.T7 (MSMg01no151_c13.b1)MSMg01-151C13.TJ (MSMg01no151_c13.g1)
ACCAG353400AG353401
length730704
length of high quality
(start - end)
243 (69 - 311)474 (82 - 555)
definitionCHROMAT_FILE: MSMg01no151_c13.b1 PHD_FILE: MSMg01no151_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:54 2005CHROMAT_FILE: MSMg01no151_c13.g1 PHD_FILE: MSMg01no151_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXCTACTCCAACAAATCCGCGGAA
TTCTTTCCATTCTTCTGGCTATTATAAATAAGGTTGCTATGAACATAGTG
GAGCATGTGTTCTTACCAGTTTGAACATCTTCTTGTATATGCCCAGGAGA
GGTATTGCTGGATCTTCCTGTAGTACTATGTCCAATTTTCTGAAGAACCT
CCAGACTGACTTCCAGAGTGGTTTTACAAGCTTGCAATCCCACCAACAAT
GGAGGAGGGTTCCTCTTTCTCCACATCCTCACCAGTATCTTAGCCATTCT
AACTCGTGTGAGGTGGAATCTCTTGGTTGTTTTGATTTGCATTTCCCTGA
TGATTAAGGATGTTGATTATTCTCTCAAGTGCTCCTCACCCATTCACTAT
TCCTCAGTTTTCTACCCCCCCGCTTAAATCTGAACCCCATTTTTCATGCA
GCTACTTGCCCCTCTCGAGTCCCGCTTCCTGAGTTCCTTGTATATCCTCG
CTATTCCCCCTCCACCCCATTTCCGCTTGCCATAACCTTTTCCCCCTCAC
TGTTGATGCCCCCCTTTGCCTTATTGTACCCCCCCCTTGCCCCTCTTCCA
CCTTTTCCCCCTCTTTCCTACCCCCTCCCCGTTCCTTCCCGCTTTTCCTC
CACTCCCCCCTGTCCCCCTCTTTTCCCCCCCTTCCCCCATTTCTTCCCTT
TTTTCCCCCCCCCATTTCCCTCCCCCCTTN
NCCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAAATGCCTTCCTAGAA
TGTTTATTCTTTAATTTTATTATATAAATTTTAACTGACAACTTAGATTC
TAATATTGTCTCTCTTTAACCTTTGCAGTACCAGTTGGCCTTGTGACAGA
ACAAGTAATTCTTCATGAAAAATCTCATTACTTAGCCAGTTAAATAAAGA
ATACATTCAAGATATGAAAAGATAATGCATATTATTGAAACAACATTATC
ATGAATGAAGGTTACAAAGCATTATTTAGTACTGTGAAGTCACTGGGTGT
ATGAAAACTAAAGCTCTGATCATGAAAGCTAAATTTCTAGTAGGGCTCCT
TTTGAAGTGACAGAGTTTCTCCCACTTGAACACTGCTGGTGTGAGGATAA
GTATTTGCAGAATTAGAAATAAGTTAAGATTGCTTTGAAAGTATTTGCAC
GTTTTTCCTTTTTGATAAGTGTCTTTTAAGAACAATAAAGGGATTTATTT
CAGTCAAGTAGTAGTGAAAATATTAGACATACCAATGCTTTGGGATTTTA
TCACAGGCATAGTTTGTGGGTGCCAAAGTCTGGACCAGGACACAGGATGG
AGTTTAACGAGCTCGACAGAACACACACAGGAACGGCAACCATTATCCAC
CAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_c13.g1 MSMg01no151_c13.g1 CHROMAT_FILE:
MSMg01no151_c13.g1 PHD_FILE: MSMg01no151_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:54 2005
         (474 letters)



>mm_chr5_7581015_7581888
          Length = 874

 Score =  886 bits (458), Expect = 0.0
 Identities = 470/474 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaatgccttcctagaatgtttattctttaattttattatataaattttaactgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaatgccttcctagaatgtttattctttaattttattatataaattttaactgacaa 260

                                                                       
Query: 61  cttagattctaatattgtctctctttaacctttgcagtaccagttggccttgtgacagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttagattctaatattgtctctctttaacctttgcagtaccagttggccttgtgacagaa 320

                                                                       
Query: 121 caagtaattcttcatgaaaaatctcattacttagccagttaaataaagaatacattcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagtaattcttcatgaaaaatctcattacttagccagttaaataaagaatacattcaag 380

                                                                       
Query: 181 atatgaaaagataatgcatattattgaaacaacattatcatgaatgaaggttacaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgaaaagataatgcatattattgaaacaacattatcatgaatgaaggttacaaagca 440

                                                                       
Query: 241 ttatttagtactgtgaagtcactgggtgtatgaaaactaaagctctgatcatgaaagcta 300
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ttatttagtactgtgaattcactgggtgcatgaaaactaaagctctgatcatgaaagcta 500

                                                                       
Query: 301 aatttctagtagggctccttttgaagtgacagagtttctcccacttgaacactgctggtg 360
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 501 aatttctagtagggctccttttgaagtgacagagtttctgtcacttgaacactgctggtg 560

                                                                       
Query: 361 tgaggataagtatttgcagaattagaaataagttaagattgctttgaaagtatttgcacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggataagtatttgcagaattagaaataagttaagattgctttgaaagtatttgcacg 620

                                                                 
Query: 421 tttttcctttttgataagtgtcttttaagaacaataaagggatttatttcagtc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttcctttttgataagtgtcttttaagaacaataaagggatttatttcagtc 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)