BAC Information

Click to search

BAC

Clone NameMSMg01-151D13
Chromosome5 (Build37)
Map Location 32,300,240 - 32,300,645
singlet/doubletsinglet
Overlap geneBre
Upstream geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151D13.T7 (MSMg01no151_d13.b1)MSMg01-151D13.TJ (MSMg01no151_d13.g1)
ACCAG353448
length724730
length of high quality
(start - end)
---406 (325 - 730)
definitionCHROMAT_FILE: MSMg01no151_d13.b1 PHD_FILE: MSMg01no151_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:58 2005CHROMAT_FILE: MSMg01no151_d13.g1 PHD_FILE: MSMg01no151_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXX
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCGACAAAATCATATGAAACTTGAAGTGAGGTTTTAAT
TCTTAGAGATGAAACTAAATCGGTATGTCTAAGTTTGAAAGTCAGAATTT
GAAAATCTTTTCTTCCAACGGAGTTATTTGACTAGAACAAAGGTAACCAA
AAAGGCAATTCCAGCCATCTCCTTGGCTCTAAAAGATAATCATAGCAACG
GCTTCTGATGAAGGTTAATATATTCCTTTCCATGCAAATGAAACTGATAG
ACCCTTTTGTGAACCNTTGNCTTGAATGTCTCTACTACTCAAGACTTGAC
TTGGCCACAGTGTGACAACAGGGGAATTATTGTGATATGACAGAGTGCAG
GGAGCCAGCCCGTCTGAAAGCCTGACTTAGGACAATGGAGTTTGACATTG
ACCCATGATGAAATAGCAACTTCCCAGTAAAATGAAGAAGGCATTATCTA
GACGGGAGGAGACCAGCCTTTATTTTTGCCTCTATAGCCTCCTCTCAACG
CAAGTGTCTCATCAGTACCATGGGGATAACACTACTCTCAAAACAGATGT
GTCTGCTTTAAGAGACATTAGGAGGATTAGATTAACAACAGGGGTTATAC
TAACATTCAAACAGCACCAAGCACTTCAAAAGGAAATACTAGAATTGCTC
TGAGCTGAGGAGGATTTCATGTCCAGGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_d13.g1 MSMg01no151_d13.g1 CHROMAT_FILE:
MSMg01no151_d13.g1 PHD_FILE: MSMg01no151_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:58 2005
         (406 letters)



>mm_chr5_32300040_32300845
          Length = 806

 Score =  785 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtctctactactcaagacttgacttggccacagtgtgacaacaggggaattattgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aatgtctctactactcaagacttgacttggccacagtgtgacaacaggggaattattgtg 547

                                                                       
Query: 61  atatgacagagtgcagggagccagcccgtctgaaagcctgacttaggacaatggagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atatgacagagtgcagggagccagcccgtctgaaagcctgacttaggacaatggagtttg 487

                                                                       
Query: 121 acattgacccatgatgaaatagcaacttcccagtaaaatgaagaaggcattatctagacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acattgacccatgatgaaatagcaacttcccagtaaaatgaagaaggcattatctagacg 427

                                                                       
Query: 181 ggaggagaccagcctttatttttgcctctatagcctcctctcaacgcaagtgtctcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggaggagaccagcctttatttttgcctctatagcctcctctcaacgcaagtgtctcatca 367

                                                                       
Query: 241 gtaccatggggataacactactctcaaaacagatgtgtctgctttaagagacattaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtaccatggggataacactactctcaaaacagatgtgtctgctttaagagacattaggag 307

                                                                       
Query: 301 gattagattaacaacaggggttatactaacattcaaacagcaccaagcacttcaaaagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gattagattaacaacaggggttatactaacattcaaacagcaccaagcacttcaaaagga 247

                                                         
Query: 361 aatactagaattgctctgagctgaggaggatttcatgtccaggagt 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aatactagaattgctctgagctgaggaggatttcatgtccaggagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)