BAC Information

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BAC

Clone NameMSMg01-151D19
Chromosome5 (Build37)
Map Location 23,107,316 - 23,107,891
singlet/doubletsinglet
Overlap geneSrpk2
Upstream geneLOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151D19.T7 (MSMg01no151_d19.b1)MSMg01-151D19.TJ (MSMg01no151_d19.g1)
ACCAG353458AG353459
length728737
length of high quality
(start - end)
371 (45 - 415)576 (72 - 647)
definitionCHROMAT_FILE: MSMg01no151_d19.b1 PHD_FILE: MSMg01no151_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:59 2005CHROMAT_FILE: MSMg01no151_d19.g1 PHD_FILE: MSMg01no151_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGAGAGCTCAGAGTTTAAGGATAGAATGTTTGCCTAGCATGTAT
GAAGCCCTAAGCTCAATTCCTAGCACTGAAATAACATAAATTCCAGGAGC
TCGGATATTATATAGATGATTTTTTTAAAAAGATGTATGTTATTTGTATG
TGTGTGAACAGTTTATTAACTTCTACGTATGTGCACTGTATGCCTGGTGC
CCATGGAAGTCAGAATAGGGGTCACATCTTCTGGAAATGAAATACAGATG
GTTGTGAGCCACTGTGTGAGTGCTGAGAATCAAACCTGGGTCTCCTGCAA
GAGCAACAAATGTTCTTAGCCATTGGCCATCTCTCCACCCCCAGGCGAAT
TTTTCAAGCTTTATCCCCAACTTGTGTGTGTGCCCTGTGTGGGGTACCTT
CAGTGGCCAGAAGAGGGCATCGCATCCCCTAGAGCTAGAGTCACGGGTGT
TTGTCAGTGGCCTGGTGTGGGTGCCTGAGATCCAGCAAGTACTCTTCAGC
CCTGTGAAGGTGAATTCTAAAATGTACGTAGTTTCATTTTCTTTTTTTAA
TGTATTTACTTTGGCCAAGGAGTATAGCACAGTGGCCCCATTAGTTCCCC
CTTGTGTTAAAACTGGAAAGGCCTGTTGAATGTCTCCATGAACAGATGCC
TGGGCGGTGAAGACATACCCCCAATGCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCAAAAATATCTATGTTGTAAACTATCGGTGGGGTTTTT
ATTATTTGTGTGTGATTTACATGTATGTGAATGTATACATCTGTAATGTG
AGAGCAAGTGAGCAGGCATGGGCACATCCCAAGGTGTACATGGAAGCCCA
AGTCCAACTCTGGGTGTCAGGCGCTGCCTCCCACTCTGTTCAAAGCAGTC
TCTCTTTCTGTCACTACTACGCAGGGCAGGCTAGCTGACCTCTGAGTCAA
GGGTTGTCCTGTCTCTTATATCTCCACGCAGATGTAGGTGTACACACTGG
GCGTTCAAACATCTGCATGGCAAGGCCTTTACCCACTGAGCTCCCTCGTG
GCCCATGTGCTACACCGCCCACCTTGTGACCCGCTGGTGAGGAAGGACTT
GCATGCCTCATCACTTCTCTGGAAGACGAGCACGGTAACAACCTGAAGAC
TAAGAGCATCATGAAAAGGCTTATTTTGACTTTAACAAGAGGGCAAAAAG
AAAGACCAAGAAAAAAAAATTAATTACTCCATTGTTAGGACCCTTGGGAT
TTAATTGTCACAATAGTTAAAGTTGACCCTTAAGTTTTCAGAGTGGGGGG
GGGGGGGTTTATCTTTCTTCTACAATATAATTACCTTAAAAATTTTTCAA
TTTTTATACACCACTTTCTTTGTTTTTTTTGTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_d19.g1 MSMg01no151_d19.g1 CHROMAT_FILE:
MSMg01no151_d19.g1 PHD_FILE: MSMg01no151_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:59 2005
         (576 letters)



>mm_chr5_23107116_23108091
          Length = 976

 Score = 1083 bits (560), Expect = 0.0
 Identities = 572/576 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgttgtaaactatcggtggggtttttattatttgtgtgtgatttacatgtatgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgttgtaaactatcggtggggtttttattatttgtgtgtgatttacatgtatgtgaa 260

                                                                       
Query: 61  tgtatacatctgtaatgtgagagcaagtgagcaggcatgggcacatcccaaggtgtacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatacatctgtaatgtgagagcaagtgagcaggcatgggcacatcccaaggtgtacat 320

                                                                       
Query: 121 ggaagcccaagtccaactctgggtgtcaggcgctgcctcccactctgttcaaagcagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagcccaagtccaactctgggtgtcaggcgctgcctcccactctgttcaaagcagtct 380

                                                                       
Query: 181 ctctttctgtcactactacgcagggcaggctagctgacctctgagtcaagggttgtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctttctgtcactactacgcagggcaggctagctgacctctgagtcaagggttgtcctg 440

                                                                       
Query: 241 tctcttatatctccacgcagatgtaggtgtacacactgggcgttcaaacatctgcatggc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcttacatctccacgcagatgtaggtgtacacactgggcgttcaaacatctgcatggc 500

                                                                       
Query: 301 aaggcctttacccactgagctccctcgtggcccatgtgctacaccgcccaccttgtgacc 360
           |||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 501 aaggcctttacccactgagctccctcgtggcccatgtgctacactgctcagcttgtgacc 560

                                                                       
Query: 361 cgctggtgaggaaggacttgcatgcctcatcacttctctggaagacgagcacggtaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgctggtgaggaaggacttgcatgcctcatcacttctctggaagacgagcacggtaacaa 620

                                                                       
Query: 421 cctgaagactaagagcatcatgaaaaggcttattttgactttaacaagagggcaaaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgaagactaagagcatcatgaaaaggcttattttgactttaacaagagggcaaaaaga 680

                                                                       
Query: 481 aagaccaagaaaaaaaaattaattactccattgttaggacccttgggatttaattgtcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaccaagaaaaaaaaattaattactccattgttaggacccttgggatttaattgtcac 740

                                               
Query: 541 aatagttaaagttgacccttaagttttcagagtggg 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatagttaaagttgacccttaagttttcagagtggg 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)