BAC Information

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BAC

Clone NameMSMg01-151O12
Chromosome5 (Build37)
Map Location 100,175,295 - 100,322,166
singlet/doubletdoublet
Overlap geneLOC100040738, LOC666364
Upstream gene1700007G11Rik, Bmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
Downstream geneLOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151O12.T7 (MSMg01no151_o12.b1)MSMg01-151O12.TJ (MSMg01no151_o12.g1)
ACCAG353941AG353942
length784755
length of high quality
(start - end)
246 (73 - 318)342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no151_o12.b1 PHD_FILE: MSMg01no151_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:51 2005CHROMAT_FILE: MSMg01no151_o12.g1 PHD_FILE: MSMg01no151_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,175,295 - 100,175,540)(100,321,843 - 100,322,166)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCCACAAAGGCGCCGAGCAGGCAAAAAGGAAATTAAAAATTGTGAGGGG
AGAAAAGGACATTAAACAGACTCCGCTCATTTGTTTTAATTAGCATAGCT
GAATTTTAATTATCACAGTTCTTCACCAGACTCCAGTAAATGTGCTGAAA
CCATCTTGTAAAATTAACAGAGCTTTAACACGACAGGGCCTTGCTTAATT
TTATTCTATTCTTCATTTGTTTTTAAGGGGGGGAAAAAGTAATTTAAGCA
AAAAGGTTGGGGGTATTGGATTATTTTCCTAAAGTACAATGAACTAAGAA
ATTCCTCTGACCATGATCCCCAGGAACGTAGGGAGGCCTCTGTTCTATTT
ATTATGTATTGCCCCCCTTCTCTTTAANAATTGGAATATGAATGATCGCA
ACCTTCACCCCACACCCCTCTCCCTCTCCCCTCCCCTTAGCACTCATTAC
TTCCCTCACTCTTCTCCCCTTACTCCTCCTTTTCCTCCTCTTTCATCCTT
TCCCTCTTCCCTCTCCCCTCCCCCTCGCCCTCTACCCTTCATTTCTCCCC
TTTTTCTCTTTCCCCCCATCTTTTTCTTCTTATTTTTTCCCCCCTTTTTC
CCTTTCTTCTTTCCCCCCCTTCCCGCCTTTCTCCCTTCTCCCCCCTTTTC
TTCCTCTCCCCCTTCCTCCCTGTCCACTTCTTCCTCTTTCTTCCTCCCCC
CCCCTCCTCCCCTCTCTCATCTCCCCCCCTCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATTCTTTTTGTCTCTCAGAAAA
TAAACAGAGATCAAAACTTTGATAAGGGGCTTGCTATGTTTTGGAATAGC
ATCCCTCATAGATCCATGAGCTAAAGGCTTAGATGACAGCTGACGGCACA
CTGGGAGGTGGGGCCTATCCAGATTGCTGAAGAGACCATATACTCTGGGT
ACAGGACTTAGAGGCTCTGAACTCGATCTGACCTAAAGGCTTCCTCTCTG
AGGTCTGATGCCTATGAACGAAAGCAATGACCAGCATGGCATGATTTCCC
TAAAGGTACAATGGTGGCACACATGCCTTGGCAGGACCCAACAGCTTTGA
AATTGTACTTAAAACTCGCAACAACCACCGATTTGAATGAGAATGCAGCC
ATGGGTGTATGTTTGAATACATACTTCCTAGTTGGGCGAACTGTTGGGGA
ACGATTGTGCATTCTTTCCCCCCCTTACTCCCCTTTCCCCCCCCTCCCTT
CCCCCTCCCTTCCCCCCTATTTTTCCCCCCTTTCCCTCCTCCCCCCTTCC
TCCCCTTTCTCCCCCCCCCTTTTATTTTCCCCCCCTCCTCCTTCCCCCCC
CCTCCCCCTCCCTCTCTCAACCCCCCCTCTTCCCCTACACCCCTCCCACT
CCCTCACCCCTTCCTTCTCTCCACCCACTTCCTCTCCTATCTTCCCCACC
TCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_o12.b1 MSMg01no151_o12.b1 CHROMAT_FILE:
MSMg01no151_o12.b1 PHD_FILE: MSMg01no151_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:51 2005
         (246 letters)



>mm_chr5_100175095_100175740
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaaggaaattaaaaattgtgaggggagaaaaggacattaaacagactccgctcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaaggaaattaaaaattgtgaggggagaaaaggacattaaacagactccgctcattt 260

                                                                       
Query: 61  gttttaattagcatagctgaattttaattatcacagttcttcaccagactccagtaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttaattagcatagctgaattttaattatcacagttcttcaccagactccagtaaatg 320

                                                                       
Query: 121 tgctgaaaccatcttgtaaaattaacagagctttaacacgacagggccttgcttaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgaaaccatcttgtaaaattaacagagctttaacacgacagggccttgcttaatttt 380

                                                                       
Query: 181 attctattcttcatttgtttttaagggggggaaaaagtaatttaagcaaaaaggttgggg 240
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 381 attctattcttcatttgtttttaaggggggggggaagtaatttaagcaaaaaggttgggg 440

                 
Query: 241 gtattg 246
           ||||||
Sbjct: 441 gtattg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no151_o12.g1 MSMg01no151_o12.g1 CHROMAT_FILE:
MSMg01no151_o12.g1 PHD_FILE: MSMg01no151_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:51 2005
         (342 letters)



>mm_chr5_100321843_100322584
          Length = 742

 Score =  565 bits (292), Expect = e-165
 Identities = 316/324 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattctttttgtctctcagaaaataaacagagatcaaaactttgataaggggcttgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atattctttttgtctctcagaaaataaacagagatcaaaactttgataaggggcttgcta 265

                                                                       
Query: 61  tgttttggaatagcatccctcatagatccatgagctaaaggcttagatgacagctgacgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 tgttttggaatagcatccctcatagatccatgagctaaaggcttagatgacagctgacag 205

                                                                       
Query: 121 cacactgggaggtggggcctatccagattgctgaagagaccatatactctgggtacagga 180
           |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 204 cacattgggaggtggggcctatccagattgctgaagagaccatatactttggatacagga 145

                                                                       
Query: 181 cttagaggctctgaactcgatctgacctaaaggcttcctctctgaggtctgatgcctatg 240
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 144 cttagaggctctgaactggatctgacctaaaggcttcctccctgaggtctgatgcctatg 85

                                                                       
Query: 241 aacgaaagcaatgaccagcatggcatgatttccctaaaggtacaatggtggcacacatgc 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 84  aacgaaagcaatgaccagcatggcgtgatttccctaaaggtacaatggtggcacacatgc 25

                                   
Query: 301 cttggcaggacccaacagctttga 324
           |||||||||| |||||||||||||
Sbjct: 24  cttggcaggaaccaacagctttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)