Query= MSMg01no151_p04.b1 MSMg01no151_p04.b1 CHROMAT_FILE:
MSMg01no151_p04.b1 PHD_FILE: MSMg01no151_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:54 2005
(216 letters)
>mm_chr5_124978756_124979370
Length = 615
Score = 362 bits (187), Expect = e-104
Identities = 205/211 (97%), Gaps = 3/211 (1%)
Strand = Plus / Plus
Query: 5 gaattccatcggtactcggtgacctgtgatggccccggcccagccacaacagaaataaag 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcgg-acttggtgacctgtgatggccccggcccagccacaacagaaataaag 263
Query: 65 cacagggaggggacacgaaatagtgccagcg-ggacttctggcagacaccaggccgagtc 123
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct: 264 cacagggaggggacacgaaatagtgccag-gaggacttctggcagacaccaggccgagcc 322
Query: 124 cgtggtaggatggatcctggattcaacatgggcggactgtgaggccctccctcccggagg 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 323 cgtggtaggatggatcctggattcaacatgggaggactgtgaggccctccctcccggagg 382
Query: 184 ccctctaggggaggtgaatatgggggtgggg 214
|||||||||||||||||||||||||||||||
Sbjct: 383 ccctctaggggaggtgaatatgggggtgggg 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 615
Length adjustment: 9
Effective length of query: 207
Effective length of database: 606
Effective search space: 125442
Effective search space used: 125442
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no151_p04.g1 MSMg01no151_p04.g1 CHROMAT_FILE:
MSMg01no151_p04.g1 PHD_FILE: MSMg01no151_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:54 2005
(482 letters)
>mm_chr5_125045379_125046254
Length = 876
Score = 857 bits (443), Expect = 0.0
Identities = 470/485 (96%), Gaps = 12/485 (2%)
Strand = Plus / Minus
Query: 1 ctccgtgctccctacagagtcagcctgtgggacgagctggggaagcctgtggcgctggtc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctccatgctccctacagagtcagcctgtgggacgagctggggaagcctgtggcgctggtc 617
Query: 61 acagggacaccttctgtttcttcttcttggccttcagcacaggagggagggagatcttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acagggacaccttctgtttcttcttcttggccttcagcacaggagggagggagatcttaa 557
Query: 121 aagctgtcctggaatgacagagaagggaccctcaggctctggagctcaggaacccactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aagctgtcctggaatgacagagaagggaccctcaggctctggagctcaggaacccactcc 497
Query: 181 cacccagcgcctacgaagatactcactcgcacgtggtgcagatggggctgaaattgcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cacccagcgcctacgaagatactcactcgcacgtggtgcagatggggctgaaattgcaga 437
Query: 241 aaactgttaaaagtgatgcagagaacaaggcaattaggggacttgaaaagcacaggttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaactgttaaaagtgatgcagagaacaaggcaattaggggacttgaaaagcacaggttac 377
Query: 301 tttttgccccacccacaccccacaccctaacactgacagtgag---accaccacacgtgc 357
||||||||||| ||||||||||||||||||||||||| | ||||||| |||
Sbjct: 376 tttttgcccca-------cccacaccctaacactgacagtgagaaaa--accacacatgc 326
Query: 358 gcttactagacagacacacagagcagacatagccaatctcaatgagactgcgatgacaga 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttactagacagacacacagagcagacatagccaatctcaatgagactgcgatgacaga 266
Query: 418 agcaggcagccctgtagtccacgtggatcgggggtgggaggattagctgagaccgctgat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaggcagccctgtagtccacgtggatcgggggtgggaggattagctgagaccgctgat 206
Query: 478 cttgg 482
|||||
Sbjct: 205 cttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 876
Length adjustment: 10
Effective length of query: 472
Effective length of database: 866
Effective search space: 408752
Effective search space used: 408752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
