BAC Information

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BAC

Clone NameMSMg01-152C15
Chromosome5 (Build37)
Map Location 46,136,719 - 46,136,829
singlet/doubletsinglet
Overlap geneLcorl
Upstream geneLdb2, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152C15.T7 (MSMg01no152_c15.b1)MSMg01-152C15.TJ (MSMg01no152_c15.g1)
ACCAG354126AG354127
length826950
length of high quality
(start - end)
127 (228 - 354)---
definitionCHROMAT_FILE: MSMg01no152_c15.b1 PHD_FILE: MSMg01no152_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:11 2005CHROMAT_FILE: MSMg01no152_c15.g1 PHD_FILE: MSMg01no152_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCCCCCCTCCATCTTCCCTTCCCTTGCCCCTTCCTNNCCCCCNAATT
ATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGGAAT
TCTAGGCATCATTTCCCCGACACATTAAAAAAATAAAAACTCTTCCCCAC
TTCTGAGTCATCTTTTGTGAATATTACTGGATTATTCCCTATATCTTATC
TCCAGTCCAGCACAGGATAACTCACGAAAGATACCCACTGTGCTTTTTTC
AAGAAGTGATATGATTCCTAAACCATTTGAATAAAAACTACCTGTTCTCT
CATCTCAACCCATTGATTTAGCATCTTCTCACATTCTTCTTTTTTTTTTT
AAGGAGAAGCTTATTCGCTTATTAGTTCTGAACTTTTTTGCTTTTGTTTT
TGTTTGCTTGTTTGTTTTTCGATACAGGCTTTCTCTGTGTAGCTCTGGCT
GACCTGAAACTCTCTCTGTACACCCGACTGGTCTTGAACTCCGAAATCCG
CCTGCCTCTGTTTCCCAAGTGTTGTCCTTAACGGCGTGTGCCTCCCTGCT
CGGCCTTCTTCCTACATCCCTAAAAGTTTTTTCCTTTACTTCCCTGCGGA
TACCGACTATCTTCCCTACCCATTCCAACTTTAGCTATCTCTTCTCCGTT
TTAATCCCCCCCTTCCCTCCCTTTTCGCTCCCTATCTTCACGCCTATACT
TCCCCTCCCTTTTCCAGCACTATCCCATTTCCCACCCCTTTCCCATTCAA
CCTCTCGTATCCCCTCTTCTGCCCCTGGCCGCAAATAAACACGTTTCTCC
CACTATGTCCTTCATATTACTCACAA
CCCTCAACTATTTATCAAACCACTCACCCCCCCGTCCCCCCATTCGCATG
AAGCGCGTAGACTGGAGGACGACCGGCCTTCAAAAAAACGCGACCTATAG
AAGGATTCCCGCAAATCTTTCCTTAGATCCGACCCCCCCTTTTTAACGGG
GCTATCCGATTTTTTGCACGTTACTCTCCTGCGTCCTTTATATACATCGC
ATATTGTATCTATCCCCCCTACCACCTTCCCCATCCCCCTCCCTCCACCC
CCCATCCCCCCATCCCCTCCTTCCGCCTTCCTCCTCCTTCCCCTCCTCCC
TCTCTTCCCTTTTCCCTCCTCATTTTTTTCTCTCCATCCATTTTCCCCCA
ACCCCCCCTCCCGACCCTATCCACTGACCCCCCCTCCTTTTCTCCACTTA
TTATAAACCAATCCTATAACCCCCCCCCCTTACACTCCCCCTCCTGTATC
TCAGTATTCATTCCCCCCCCCTCCTCTTCCACACCTCTATTTTCTCCCCT
CATTTCCCACCCCCTTTCCTCATTTCCCCCCCCCCTTTTTCCCCCCCCTT
ACCACCTCCCCTCTCTTACCTCCCCTTTTCTGTTCCTTCCCTTTCAACAC
CGTCTCGAACCCTCCCTTCCCCCCCCACTTACCCTTTACCCACCCATTCC
CCTATATTATCTTCCTTTCTCCCTTATCCTCCCCTTCCCTCCCTTCACCC
CACAATCTTTTTCCTCTTTTTTTATTTCGCCCTTTCCCACCTCCTCTACC
ACCCTCCCTCGATCCCAATTATCCCGCCCCCCTCCCCCTTCCCTTTTTCT
TCTCTCTCCTTGCTCATATATCATTCAGCCCCCCCCACCCCTCAACCCTT
CCCTCCCCTACACTACATATTCCTTCCTCCCCCCTCCCCTCCCTTTACCC
CCTTTCCCTCCTCTTATCCCCTATCCACCTCCTCTTTTCACATCCCTTAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_c15.b1 MSMg01no152_c15.b1 CHROMAT_FILE:
MSMg01no152_c15.b1 PHD_FILE: MSMg01no152_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:11 2005
         (127 letters)



>mm_chr5_46136519_46137045
          Length = 527

 Score =  199 bits (103), Expect = 4e-56
 Identities = 109/111 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagatacccactgtgcttttttcaagaagtgatatgattcctaaaccatttgaataaaaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aagatacccactgtgcttttttcaagaagttatatgattcctaaaccatttgaataaaaa 260

                                                              
Query: 61  ctacctgttctctcatctcaacccattgatttagcatcttctcacattctt 111
           ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctacctgttctctcatctcaagccattgatttagcatcttctcacattctt 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)