TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCCTA
TTGTAGCACTGAAATTCTGAGTTCTGGGGAACCGCTCTGTCTCCTGAAAA
CCAGAATGATAGGTCTTTTCATAAGGAGCTAGACGTTTCTGGGAAGAGTT
TGGAATGATAAAAGAAGCTTTATATTCTGCTTCTTCACAAAGGTTTCAGA
GTCAGATGAACCATCAACCAAGACGTCTGAAAATGAATGAAGGTAGGACT
GGCATCTACTTCGGGCAGTGAGAACCGTGTGGTATAAGTACCAGATGTGA
AAGAGTGTGGGAACCGAACTCTGGATTCCTTTGAAAAGCTATGGAAGCGA
GTCTTGAAGTGTTCTAGATCGCAAACGGCCTCCCTGATATACTCAAAACC
TTGCCTTTTATCTCAAAGGCATCAAGGGATTCTGGGTAATGTTATAGTCG
AGAACATAGCTGAGATTTTCTGAGTTTGGAGTTTGTGTTAGAAAGACACA
GACTTGGAGAAAGCTCCGAGGTCCTGCACTTATTTCCGGAGAGCTTGCAG
ACCCAGTCAGGAACTAATTCGTTTAACCCCTCCCACCACACGGGGCTCAT
TAGAAAAATGTACGGGTCATGCTTGCACAGTGCAGAATTTAGATGAAAGC
ACTTTTCATTACTTGTGAAAAGGCTTCAGGTGGCGCAGCCTAGGAAGTTG
CCTAGTATCCAGACATCAGAATCTGTGAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCAATCCCTACCAAGTTTAAAGGAAAGTAAAATCTNTGAATTG
TACATTGAACTTAAGATGACCCCTCTTAACTTTACCTGATAGTTTCANAG
ATGAAGGGTGTTGTTGTTGTTGTTGTTTTGTTTGTTTGCGTTTGGTTTTG
GTTTGGTTTTGAATNAANNAAAAAAANAAAAAAAAAAAAAAAAAAANAAA
AAAAANAATAAAANAANAAAAAANNAAAAAAAAAAAAAAANANANAAAAA
AAAAAAANAAATAAANAAAAAAATATTTTTTTATTTCTTTTNTTATTATA
TATAATTTAAATATTAAATTTTTTTATCTTAATTCTTAATATAAAATATA
TTTTTAAAATTTTTCCTTTTATACCTCACCCCTCTCCCCCCCCCCTCTCC
ACCCCTTCCCCCCCCCCCTACCCCCCCTCCCCCCCCCCCCCCCCCTCTTC
TCCCCCCCCACCCCCCCTTTCACCCCCCCCCCCCCCCCCCCCCCCCCCTT
TCCACCCCCCCCCCCCTCCCCTCTCCCTTCCCCCCCCCTTTATCCCCCCC
CCCTCCCCCCCCCCCCCCCCCCCATCCTCCCCCCCCCCCTCCCCCCCCCC
TCCCCCCCACCTCCACTCACCCCCTCCCCCCACCCCTCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCCCCCCCCCCACCCCCCCCCCCCCCTCCCCCCC
CCCCCC

Query= MSMg01no153_a24.b1 MSMg01no153_a24.b1 CHROMAT_FILE:
MSMg01no153_a24.b1 PHD_FILE: MSMg01no153_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:21 2005
         (696 letters)



>mm_chr5_51134665_51135760
          Length = 1096

 Score = 1286 bits (665), Expect = 0.0
 Identities = 686/693 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccctattgtagcactgaaattctgagttctggggaaccgctctgtctcctga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 204 ggaattctccctattgtagcactgaaattctgagttctggggaaccgctctgtctcctgc 263

                                                                       
Query: 64  aaaccagaatgataggtcttttcataaggagctagacgtttctgggaagagtttggaatg 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 aaaccagaatgataggtcttttcataaggagctagacatttctgggaagagtttggaatg 323

                                                                       
Query: 124 ataaaagaagctttatattctgcttcttcacaaaggtttcagagtcagatgaaccatcaa 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 ataaaagaagctttatattctgcttcgtcacaaaggtttcagagtcagatgaaccatcaa 383

                                                                       
Query: 184 ccaagacgtctgaaaatgaatgaaggtaggactggcatctacttcgggcagtgagaaccg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaagacgtctgaaaatgaatgaaggtaggactggcatctacttcgggcagtgagaaccg 443

                                                                       
Query: 244 tgtggtataagtaccagatgtgaaagagtgtgggaaccgaactctggattcctttgaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtggtataagtaccagatgtgaaagagtgtgggaaccgaactctggattcctttgaaaa 503

                                                                       
Query: 304 gctatggaagcgagtcttgaagtgttctagatcgcaaacggcctccctgatatactcaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctatggaagcgagtcttgaagtgttctagatcgcaaacggcctccctgatatactcaaa 563

                                                                       
Query: 364 accttgccttttatctcaaaggcatcaagggattctgggtaatgttatagtcgagaacat 423
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 564 accttgccttttatctcaaaggcatcaagggattctgggtaatgttatggtggagaacat 623

                                                                       
Query: 424 agctgagattttctgagtttggagtttgtgttagaaagacacagacttggagaaagctcc 483
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 624 agctgagattttctgagtttggagtttgtgttagaaagacacaaacttggggaaagctcc 683

                                                                       
Query: 484 gaggtcctgcacttatttccggagagcttgcagacccagtcaggaactaattcgtttaac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaggtcctgcacttatttccggagagcttgcagacccagtcaggaactaattcgtttaac 743

                                                                       
Query: 544 ccctcccaccacacggggctcattagaaaaatgtacgggtcatgcttgcacagtgcagaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccctcccaccacacggggctcattagaaaaatgtacgggtcatgcttgcacagtgcagaa 803

                                                                       
Query: 604 tttagatgaaagcacttttcattacttgtgaaaaggcttcaggtggcgcagcctaggaag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttagatgaaagcacttttcattacttgtgaaaaggcttcaggtggcgcagcctaggaag 863

                                            
Query: 664 ttgcctagtatccagacatcagaatctgtgaga 696
           |||||||||||||||||||||||||||||||||
Sbjct: 864 ttgcctagtatccagacatcagaatctgtgaga 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)