BAC Information

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BAC

Clone NameMSMg01-153C01
Chromosome5 (Build37)
Map Location 67,971,085 - 67,971,702
singlet/doubletsinglet
Overlap genenone
Upstream geneApbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik
Downstream geneD830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153C01.T7 (MSMg01no153_c01.b1)MSMg01-153C01.TJ (MSMg01no153_c01.g1)
ACCAG354812AG354813
length737699
length of high quality
(start - end)
267 (43 - 309)622 (72 - 693)
definitionCHROMAT_FILE: MSMg01no153_c01.b1 PHD_FILE: MSMg01no153_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:26 2005CHROMAT_FILE: MSMg01no153_c01.g1 PHD_FILE: MSMg01no153_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACATCCGCGGAATT
CCATGAGTCTGTCAGCAACCATTGGTGCTGGGTGAGATGCTGTCTAAGCC
AGGCCTGGACTGATAAAAGGTTTAACGCCATTTGATACCTCATTGTATAC
CCCAGGCTTTTCAGTGGCCAGGGAAGGTGAACTCGCTCCAGGGAGATCAG
CAAGAGGTTCAGTGAAAAGCAAGCGGGTTAGACTTCTTTCTGACAGAGCG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTCCCCCCCACCTTTTTTTTTTTCCCGCTCCTGATTCCGACGTCC
CCATTATCCATTTCCCCCCCACCCCCCTCTCTCCTCTCTCGCTTTCTTTT
GCTCTTTCGTGTTCGATCCCCATCTCTTACACACTCTCGTTTCCCTGCTA
CCTTTCTCTCCTTTCCTTCTCTCCCTCTTTTCTATCCCTCTCTTTTTCCT
TTTTCTCTTTTTTCCCTCCCTCCTCCTTCCCCTTCACCTACTATCCCTTC
TTTTTCACCCCTCTTTTTATCCCCCCCTTCCTCTTCCCTATTTTCTATCT
CGCTCTTCTCGTGTTTTCTTTCCCCCCCCATCTTCTCTCTTTTTCCCCCT
TCCCCTCCTCCCTCTCTCCCCTTCTTTTTTACCCCCCCCCTCTCCTTTCA
TTTCTCTTCTTCATCTTGCCCCCCCCTCCACTTAATC
AATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGTTTACTGCTAGTCTTTTTCATGGAGG
GTGGTGAGGTTTTCTTTCATCCCATCAGACTAGAAACTCACTTCCTATTG
AGAGATTACTGTAGTGTGGTTACAATTAGAAGGTGGTGGTGACGGCCAAT
CAAGACTTCATACAAGAAGACTGACATTTATGCTTTATTCCCATGCTTCA
GTATTTTACCAAATCATCTTGATGGGCTATAATTCTTATTTTAGAGAACT
GCGCACTTCCTGTTTCTTATTTCAATCAACGTATTTGTAAATCTATTCAC
AAAGATACTGTGGGTTAAAACAAACACAAGAACTCCTTTAGACTCATTGG
ATATCAGCAAGATGATTTATTTAGGTCAAAAGTTTAATAAAGAACAAAAA
ATAGAAGCAACTTAAATTTCCCATTGAATTAAAAAAAAAATCCTTCCTGT
GTGCCTCATTCCCTAACAGCTCCACTCTACTCCTGTCCCAGGCAAAGTTT
CTTAGAATAGTTTATAATTGATGTTCTAAGGCTTACTTGAATTCCTTTCT
GTGTCTCCAACTCCAGCCCAAACATATACTAAAACCAACAAGCCACACAG
ATAGTGTCCAGGGTGTTAAATCTACCATTTCCTGTCACTAGGACCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_c01.g1 MSMg01no153_c01.g1 CHROMAT_FILE:
MSMg01no153_c01.g1 PHD_FILE: MSMg01no153_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:26 2005
         (622 letters)



>mm_chr5_67970875_67971895
          Length = 1021

 Score = 1172 bits (606), Expect = 0.0
 Identities = 617/622 (99%), Gaps = 4/622 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtttactgctagtctttttcatggagggtggtgaggttttctttcatcccatcagact 60
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ttgttta---ctagtctttttcatggagggtggtgaggttttctttcatcccatcagact 772

                                                                       
Query: 61  agaaactcacttcctattgagagattactgtagtgtggttacaattagaaggtggtggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 agaaactcacttcctattgagagattactgtagtgtggttacaattagaaggtggtggtg 712

                                                                       
Query: 121 acggccaatcaagacttcatacaagaagactgacatttatgctttattcccatgcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 acggccaatcaagacttcatacaagaagactgacatttatgctttattcccatgcttcag 652

                                                                       
Query: 181 tattttaccaaatcatcttgatgggctataattcttattttagagaactgcgcacttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 651 tattttaccaaatcatcttgatgggctataattcttattttagagaactgcacacttcct 592

                                                                       
Query: 241 gtttcttatttcaatcaacgtatttgtaaatctattcacaaagatactgtgggttaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gtttcttatttcaatcaacgtatttgtaaatctattcacaaagatactgtgggttaaaac 532

                                                                       
Query: 301 aaacacaagaactcctttagactcattggatatcagcaagatgatttatttaggtcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaacacaagaactcctttagactcattggatatcagcaagatgatttatttaggtcaaaa 472

                                                                       
Query: 361 gtttaataaagaacaaaaaatagaagcaacttaaatttcccattgaattaaaaaaaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 471 gtttaataaagaacaaaaaatagaagcaacttaaatttcccattgaatt-aaaaaaaaat 413

                                                                       
Query: 421 ccttcctgtgtgcctcattccctaacagctccactctactcctgtcccaggcaaagtttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccttcctgtgtgcctcattccctaacagctccactctactcctgtcccaggcaaagtttc 353

                                                                       
Query: 481 ttagaatagtttataattgatgttctaaggcttacttgaattcctttctgtgtctccaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttagaatagtttataattgatgttctaaggcttacttgaattcctttctgtgtctccaac 293

                                                                       
Query: 541 tccagcccaaacatatactaaaaccaacaagccacacagatagtgtccagggtgttaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tccagcccaaacatatactaaaaccaacaagccacacagatagtgtccagggtgttaaat 233

                                 
Query: 601 ctaccatttcctgtcactagga 622
           ||||||||||||||||||||||
Sbjct: 232 ctaccatttcctgtcactagga 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space:   618732
Effective search space used:   618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)