BAC Information

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BAC

Clone NameMSMg01-153G12
Chromosome5 (Build37)
Map Location 135,955,268 - 135,955,703
singlet/doubletsinglet
Overlap geneHip1
Upstream geneClip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121
Downstream geneCcl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153G12.T7 (MSMg01no153_g12.b1)MSMg01-153G12.TJ (MSMg01no153_g12.g1)
ACCAG355014AG355015
length722762
length of high quality
(start - end)
439 (37 - 475)154 (68 - 221)
definitionCHROMAT_FILE: MSMg01no153_g12.b1 PHD_FILE: MSMg01no153_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:46 2005CHROMAT_FILE: MSMg01no153_g12.g1 PHD_FILE: MSMg01no153_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCA
GTTTCTGCGTTGACATTTGACTTCCTCAAAGCAAAGCCACCAAGAACTCT
CACTTCTGTGTCTTCAGGGCCACGGGGACCGCCTGCTTCCTTAGGGGAGG
GGAGAGGGAGACCTAGAAGGGTAGAGATGAGGTGGGCACTGCACAGTGCC
TGGGCACGGCAACCCCCAGCTGGACCCCCCCCCACCTCCTGGAGGGTGGG
TCTGCGGGTTATCAGCTCAGGGTGGCAACCCCACCAGATCCATCTTCCAC
CCTCTCTCCTCCCGCCTCCCTGTTTCTCACAGTCTCACATAGCTCCTGCT
GGCCTCAAATTCCCTGGACACTTTCCAAGTGCTGGACACAGGTATGCACC
ACCATGTCCAGCTTCATGCGGTGTGAGGGATAGAACCCATGGCCTCAGAC
GTGCAGGCAGGCCGAGCAACCTACCATCAAGCCACATGCCCAGCTCAGAA
CGCGCTTATCTTAACTAAAGCACACTTCTGGCAGGATGGCTCAGTGGGGA
AAGGGGATTGCAGGTAAATCTTGATGCCATGAGTTTGATCCCCAGAGTCT
ACCTGATGGAAGGAGAACACTGACTCCCCCCAGTTGTCCTTAGACCTCTT
GGCCCTCCCCCACCCTTGTGCTTTTTTTTAACTAAGGCATAATTATCAAT
CCCGTCTGAAGTCCCTGTTCCA
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTACAAAGTAAGTTTCAGG
ACAGCCAGGGCCTCACAGAGAAACCCTGTCTCAAAAAACTAAACAAAACA
CCTCCTGCCCCAAATTAAGTACATGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTATCCCTCTCACATCATATTATTATTTCC
CACTCCCCTGACGCTCGCTTTTTTCTCTCGCCGTGTATTTTTTGCTCTTA
TATGCTATCTCTCCCTCCTTTTTTTTTTTTTCGTTCCTTTTTTCTTTTTT
CCTCCTTACTTTTATTCTCCTTTCTCTCTTTTTCCCCATTTTTTTCTTCT
ACTTTCTCCCCTTTTTTCCCCCCCTCCTATCTCTTTATCCTTTTTTCCTT
TTTCTCCTATTTCTTTCCCCCCCTTTTTTTTTTTTTTCCCTTCTTCTATC
CTCCTTCTTTATATTTTTTTTTTTTTTCTCTTTTTTTCCCTCCTCCTTTT
TTTCTTATTTTCCCTTCTCTTTTACTTATCACATCCTTTTTTTTTTCCCC
CTCTCTTCTTCTTCTTCCTCTTTTTTTTTTTCCCCCTCCTCTTTTTCCCA
TTTTTTCCCTTCTCTCCTCTTTCCCATCTTTCCATTCTCTCTTTATTTTT
TATTCTCCTCCTCCTTTTTCCCCTCTCTTTCTTATTATTTAACTTCTTTT
CTTTTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_g12.b1 MSMg01no153_g12.b1 CHROMAT_FILE:
MSMg01no153_g12.b1 PHD_FILE: MSMg01no153_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:46 2005
         (439 letters)



>mm_chr5_135955064_135955907
          Length = 844

 Score =  741 bits (383), Expect = 0.0
 Identities = 422/437 (96%), Gaps = 7/437 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcagtttctgcgttgacatttgacttcctcaaagcaaagccaccaagaactct 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcagtttcagggttgacatttgacttcctcaaagcaaagccaccaagaactct 264

                                                                       
Query: 65  cacttctgtgtcttcagggccacggggaccgcctgcttccttaggggaggggagagggag 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 265 cacttctgtgtcttcagggccacggggactgcctgcttccttaggggaggggagaggaag 324

                                                                       
Query: 125 acctagaagggtag---a--gatgaggtgggcactgcacagtgcctgggcacggcaaccc 179
           ||||||||||||||   |  ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 acctagaagggtagggtagggatgaggtgggcactgcacagtgcctgggcagggcaaccc 384

                                                                       
Query: 180 ccagctggac-ccccccccacctcctggagggtgggtctgcgggttatcagctcagggtg 238
           |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 ccagctggactcccccccc-cctcctggagggtgggtctgcaggttatcagctcagggtg 443

                                                                       
Query: 239 gcaaccccaccagatccatcttccaccctctctcctcccgcctccctgtttctcacagtc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaaccccaccagatccatcttccaccctctctcctcccgcctccctgtttctcacagtc 503

                                                                       
Query: 299 tcacatagctcctgctggcctcaaattccctggacactttccaagtgctggacacaggta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcacatagctcctgctggcctcaaattccctggacactttccaagtgctggacacaggta 563

                                                                       
Query: 359 tgcaccaccatgtccagcttcatgcggtgtgagggatagaacccatggcctcagacgtgc 418
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcaccaccatgtccagtttcatgcggtgtgagggatagaacccatggcctcagacgtgc 623

                            
Query: 419 aggcaggccgagcaacc 435
           ||||||||| |||||||
Sbjct: 624 aggcaggccaagcaacc 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 844
Length adjustment: 9
Effective length of query: 430
Effective length of database: 835
Effective search space:   359050
Effective search space used:   359050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)