BAC Information

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BAC

Clone NameMSMg01-153G16
Chromosome5 (Build37)
Map Location 143,700,004 - 143,823,140
singlet/doubletdoublet
Overlap geneFscn1, 2810055G22Rik, LOC667809
Upstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneOlfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153G16.T7 (MSMg01no153_g16.b1)MSMg01-153G16.TJ (MSMg01no153_g16.g1)
ACCAG355022AG355023
length715722
length of high quality
(start - end)		395 (67 - 461)535 (67 - 601)
definitionCHROMAT_FILE: MSMg01no153_g16.b1 PHD_FILE: MSMg01no153_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:47 2005CHROMAT_FILE: MSMg01no153_g16.g1 PHD_FILE: MSMg01no153_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,822,746 - 143,823,140)(143,700,004 - 143,700,538)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GGGTTCTTTCCCAGTTGCAGTGTGGCAGCCATGAAATGGAAATGGCCTCT
GACCCCTTAGTCTTCCCTAGTAAGAGACAGAAAACAGAATAGGAACAACT
GCTACTTACTAGCCCCTACATGCCCTGTGACCTTTCCATAGGTCACAGTT
AAAAGTCTCTCTATGGCCTCTACCCCATTCTGAGCAGGGTCAGCTATCCT
GGCCTGGAAACCCTCACTGCCCACAATAGGAGAAGATGCCGGTTTCTTTG
AAACTGCACTGCACTGTGTGCTCTGTGTCTTCACTGCATGGTAATGAACC
CTGTGATGTGTCAGTAACCTTGGTAACTCAGAGTAGTAGTTGAGAGAAAC
AGAATCTCATCGGCTGAGGTCAGGGTCCAGAGAGAGAGGGAGGGAGGGAG
GGGCAGAGGGGAGGGGAAGAGTTCTATTTTCCTTCCTCGTTTTTCTTCCT
TCATTTCTCTTCATTCCCCCCTTCCTCCCCCCTATCCTCTCCCTCTTTTC
CCTTTCTCTTCTTTCTCCCCTCCTTCCCCTTCCTTCTTACCCATCCCCCT
CTTTTCTTTCCCTCCTCCTTCTTTCCCCTTTTTCTTCTCACTTTTCCCGC
CTCTCTCCCTTATTCCTTTTCTCTTCCACCTCTCCCACCCCATCCCCTTA
TACTTTTTTTTTCAG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCAGCGCCCTCTGCAGTGGGAGACCAAGGGTGGA
GGTAGACACCACACACAACTGGGGCCAGGGGTCAGAGAGAAACTCCCTGG
TCTGCAGGCATCTTCTTCCCAGAACTCTGAAACAAACCAGTTTCCCCTGC
AAGCTCCGCCCACGCTCCTGACCTCAGAGTCCGGAACTCTCCAGATTGGT
CCATCTCTAGTCGTTCCTAACCACAACTAACACAAAGAAATTGGCAAGCT
TTGCCACACCCACTTCGCCAGGCCACGCCCACGAGAATACTGGCTTCCAC
CACCACATCTGGCTTAGGAGACAGATGTGGGACATTGAACCCAGGTTCTT
GGGCCTGCGAGCAAGCATTCCACTGACTGAGCTCCAGTCCCAACTGTTTG
TTTTTCTGTTCTTGGGGTATCTATAACCCATACTGGCATGGTATAACTCA
TGGTAATCTTTCTGCCTCCACCTCTTAAATGCTTGGATTAGAGTGGGTGT
CCCTGCAACAGTTTGATTATGTTATTAGACTTGGTCTACAGGGAGGCCTG
AAACCAGCTCCTACAGTGTGTTCNTCCTCTTATTTCTCATCTTATACCTC
TTCTATCTATCTTTTTTTTCCCCCCCCTTTTTATCTCACTTTCTACCCTT
TTTTACTTCTCCCTCCCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_g16.b1 MSMg01no153_g16.b1 CHROMAT_FILE:
MSMg01no153_g16.b1 PHD_FILE: MSMg01no153_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:47 2005
         (395 letters)



>mm_chr5_143822579_143823373
          Length = 795

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagtgtggcagccatgaaatggaaatggcctctgaccccttagtcttccctagtaagag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 562 gcagtgtggcagccatgaaatggaaatggcctctgaccccttaatcttccctagtaagag 503

                                                                       
Query: 61  acagaaaacagaataggaacaactgctacttactagcccctacatgccctgtgacctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acagaaaacagaataggaacaactgctacttactagcccctacatgccctgtgacctttc 443

                                                                       
Query: 121 cataggtcacagttaaaagtctctctatggcctctaccccattctgagcagggtcagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cataggtcacagttaaaagtctctctatggcctctaccccattctgagcagggtcagcta 383

                                                                       
Query: 181 tcctggcctggaaaccctcactgcccacaataggagaagatgccggtttctttgaaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcctggcctggaaaccctcactgcccacaataggagaagatgccggtttctttgaaactg 323

                                                                       
Query: 241 cactgcactgtgtgctctgtgtcttcactgcatggtaatgaaccctgtgatgtgtcagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cactgcactgtgtgctctgtgtcttcactgcatggtaatgaaccctgtgatgtgtcagta 263

                                                                       
Query: 301 accttggtaactcagagtagtagttgagagaaacagaatctcatcggctgaggtcagggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 accttggtaactcagagtagtagttgagagaaacagaatctcatcggctgaggtcagggt 203

                                              
Query: 361 ccagagagagagggagggagggaggggcagagggg 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 202 ccagagagagagggagggagggaggggcagagggg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no153_g16.g1 MSMg01no153_g16.g1 CHROMAT_FILE:
MSMg01no153_g16.g1 PHD_FILE: MSMg01no153_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:47 2005
         (535 letters)



>mm_chr5_143699804_143700738
          Length = 935

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcgccctctgcagtgggagaccaagggtggaggtagacaccacacacaactggggcc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcgccctctgcaatgggagaccaagggtggaggtagacaccacacacaactggggcc 260

                                                                       
Query: 61  aggggtcagagagaaactccctggtctgcaggcatcttcttcccagaactctgaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggtcagagagaaactccctggtctgcaggcatcttcttcccagaactctgaaacaaa 320

                                                                       
Query: 121 ccagtttcccctgcaagctccgcccacgctcctgacctcagagtccggaactctccagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagtttcccctgcaagctccgcccacgctcctgacctcagagtccggaactctccagat 380

                                                                       
Query: 181 tggtccatctctagtcgttcctaaccacaactaacacaaagaaattggcaagctttgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtccatctctagtcgttcctaaccacaactaacacaaagaaattggcaagctttgcca 440

                                                                       
Query: 241 cacccacttcgccaggccacgcccacgagaatactggcttccaccaccacatctggctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacccacttcgccaggccacgcccacgagaatactggcttccaccaccacatctggctta 500

                                                                       
Query: 301 ggagacagatgtgggacattgaacccaggttcttgggcctgcgagcaagcattccactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagacagatgtgggacattgaacccaggttcttgggcctgcgagcaagcattccactga 560

                                                                       
Query: 361 ctgagctccagtcccaactgtttgtttttctgttcttggggtatctataacccatactgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagctccagtcccaactgtttgtttttctgttcttggggtatctataacccatactgg 620

                                                                       
Query: 421 catggtataactcatggtaatctttctgcctccacctcttaaatgcttggattagagtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catggtataactcatggtaatctttctgcctccacctcttaaatgcttggattagagtgg 680

                                                                  
Query: 481 gtgtccctgcaacagtttgattatgttattagacttggtctacagggaggcctga 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtccctgcaacagtttgattatgttattagacttggtctacagggaggcctga 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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