BAC Information

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BAC

Clone NameMSMg01-153K21
Chromosome5 (Build37)
Map Location 77,622,049 - 77,622,697
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod
Downstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153K21.T7 (MSMg01no153_k21.b1)MSMg01-153K21.TJ (MSMg01no153_k21.g1)
ACCAG355205AG355206
length723725
length of high quality
(start - end)
---653 (67 - 719)
definitionCHROMAT_FILE: MSMg01no153_k21.b1 PHD_FILE: MSMg01no153_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:06 2005CHROMAT_FILE: MSMg01no153_k21.g1 PHD_FILE: MSMg01no153_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGTGCGCGGAATTCCAGT
CCCGTTACCAAAACAGGAAATTAGTGTATTGCTCCTAGTCTATATAGACT
CTGTCTCACCAGCAACCAAGGTGTTGTGAGGTAGTAACTCACACTCACTA
TGCCTGTACTTGATAGGTAGCAGCTCTCTGATCTCTCTGAGCTGGAGATC
AAACGCCTGTCTATGCATGATGTCTAGGCCAACCTGAGATACTCTATCAA
GACTCTGAAAAATGCGGACCATGACATATTATAATCTGTGAAAGAAGTGT
CGTGAGATAAATTATTTCATATTTAAAAACCACATGAACAAACGCAAAGT
CAACAGTTAAGACTGCTTGACCAGCAGCTGTGAAAAATGCCTCTAATTCC
AGCACTAATTCCAGTCTAAGGCTGGGTAGAACGTTCACAGCCAGAATGGT
ATATGTAGAGAGTCGTTGTTTTACACGAACGAGGATGAGGACTGACGGAT
CATACCACAGGCAAATAAGACTAGATTTCCTTGGGAGGAAATTATTTTGT
TCCTTGCATTAACCTAATAACATGCTCAAATCGCCTCACTTCTCACTGAA
GAGATACCAGAGAACTAGGCACCTCCTCAGCGGTTCTATGCGCAGGCCTG
GTTCTCCTGGCACTTTCTCGGTACAACAGGGTAGCTTCTAATACAAGATC
CTTCTTGTCTCTGCCTCCTAAGA
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTCTGGGCTTGTAGGAACCCGAGAGGAGCAT
CTGGCAGGACACAGGTGAGGCAGAGTTCTAGGAAAGAGTGAAGGAGCCCT
ACTGGGTTTGGAGGACCTCAAAAGGAAGGTAGACCAGCTCGGTGAAATGC
CAGCTAGAAAGATACTTCTAAAGCGCTAGTAGTTTGGTTGCAGATTCAGG
CTTGTGGAGAGATATTTTGTAAATAGTTAAGAAAGTAAAATCACTCGACT
GAGCTAGCAGGTGTATACACAGCTCTGTCTCAGATGCCTTTATGGGTGCA
AACATTAGATACATTTAAAAGGATAAGTATTACAGAGGAAGTCCTCAGTG
AATGTTTGTTGTTGACATAACTACAGCCGAGTCAGTGAGTCACACTCTGG
TCCAAGTATGAGCGTTTAGGAACAATTGACAGGGATGCACAGGCAGCTGT
AGCTTCCTCCTCCCGAATGACTGCAACCGGAGACCACTCCCTCGGAGAGA
CTTCCTGCCAAGACTAGCTAACTGCTCTTTTTTTTAAAAAAATTATTAGA
TAGTTTCTATTTACATTTCAAATGTTATCCCCTTTCCTAGTTTCCCCTCC
AAAAATCCCCTCTCGCCTCCTCCTTCCCCCCTTCCCCTAACTGCTCTTTC
TTGTGCTTTAACATAATAAACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_k21.g1 MSMg01no153_k21.g1 CHROMAT_FILE:
MSMg01no153_k21.g1 PHD_FILE: MSMg01no153_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:06 2005
         (653 letters)



>mm_chr5_77621849_77622901
          Length = 1053

 Score = 1147 bits (593), Expect = 0.0
 Identities = 637/655 (97%), Gaps = 8/655 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctctgggcttgtaggaacccgagaggagcatctggcaggacacaggtgaggcagagt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tctctctgggcttgtaggaacccgagaggagcagctggcaggacacaggtgaggcagagt 260

                                                                       
Query: 61  tctaggaaagagtgaaggagccctactgggtttggaggacctcaaaaggaaggtagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaggaaagagtgaaggagccctactgggtttggaggacctcaaaaggaaggtagacca 320

                                                                       
Query: 121 gctcggtgaaatgccagctagaaagatacttctaaagcgctagtagtttggttgcagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gctcggtgaaatgccagctagaaagatacttctaaagcgctagtagtttagttgcagatt 380

                                                                       
Query: 181 caggcttgtggagagatattttgtaaatagttaagaaagtaaaatcactcgactgagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggcttgtggagagatattttgtaaatagttaagaaagtaaaatcactcgactgagcta 440

                                                                       
Query: 241 gcaggtgtatacacagctctgtctcagatgcctttatgggtgcaaacattagatacattt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gcagatgtatacacagctctgtctcagatgcctttatgggtgcaaacattagatatattt 500

                                                                       
Query: 301 aaaaggataagtattacagaggaagtcctcagtgaatgtttgttgttgacataactacag 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaggataaatattacagaggaagtcctcagtgaatgtttgttgttgacataactacag 560

                                                                       
Query: 361 ccgagtcagtgagtcacactctggtccaagtatgagcgtttaggaacaattgacagggat 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 ccgagtcagtgagtcacactctggtccaagtatgagcatttaggaacaattgacagggat 620

                                                                       
Query: 421 gcacaggcagctgtagcttcctcctcccgaatgactgcaaccggagaccactccctcgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacaggcagctgtagcttcctcctcccgaatgactgcaaccggagaccactccctcgga 680

                                                                       
Query: 481 gagacttcctgccaagactagctaactgctct--tttttttaaaaaaattattagatagt 538
           || ||||||||| |||||||||||||||||||  |||||||||     ||||||||||||
Sbjct: 681 gatacttcctgcaaagactagctaactgctctcttttttttaa-----ttattagatagt 735

                                                                       
Query: 539 ttctatttacatttcaaatgttatcccctttcctagtttcccctccaaaaatcccctctc 598
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 736 ttctatttacatttcaaatgttatccccttccctagtttcccctccaaaaatcccctctc 795

                                                                  
Query: 599 gcctcctccttccccccttcccctaactgctctttcttgtgctttaacataataa 653
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 796 acctcctccttccccccttcccctaactgctctttcttgtgcttta-cataataa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)