Query= MSMg01no153_k24.b1 MSMg01no153_k24.b1 CHROMAT_FILE:
MSMg01no153_k24.b1 PHD_FILE: MSMg01no153_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:07 2005
(612 letters)
>mm_chr5_127001604_127002614
Length = 1011
Score = 1056 bits (546), Expect = 0.0
Identities = 594/612 (97%), Gaps = 6/612 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggataaaatgtcctcaggctctggatgggcaacattccaaccgcccacaatca 64
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct: 202 gaattcaggataaaatgtaatcaggctctggatgtgcaacattccaaccgcccacaatta 261
Query: 65 ttaaagttctaataagctaattagtcaattattaaagttctaataagctaattagtctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaaagttctaataagctaattagtcaattattaaagttctaataagctaattagtctcc 321
Query: 125 catatggaggtgcagcttctgtctgggagattttcttcacaccttgactatagctcattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 catatggaggtgcagcttctgtctgggagattttcttcacaccttgactatagctcattt 381
Query: 185 ttttaaaaa---tgtcttatttatttttattttatgtgtcttattttattttactttact 241
||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 382 tttaaaaaaaaatgtcttatttatttttattttatgtgttttattttattttactttact 441
Query: 242 cacctacatgtatacacatgtaccatgtatgtgcttggtacccacagatccagataaggg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacctacatgtatacacatgtaccatgtatgtgcttggtacccacagatccagataaggg 501
Query: 302 aattagatcccctggaactggagttatatatggttgtgagctgccatgtggatgctggga 361
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 502 aattagatcccctggaactggagttatatatggttatgagctgccatgtggatgctggga 561
Query: 362 actgaacctgggtccttggcaagaacagtaagtatgcttacctgctaagccatttctcca 421
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 actgaacctgggtctttggcaagaacagtaagtatgcttacctgctaagccatttctcca 621
Query: 422 ggctccaa-tgtaggtaatttttaatgattaatttttttcacagaaaatgctcacagatg 480
|||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 622 ggctccaaatgtaggtaatttttagtgattaattttt--cacagaaaatgctcacagata 679
Query: 481 agagtgttggagccacacactacacttagaccatccccatgaagactctggctattcatt 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agagtgttggagccacagactacacttagaccatccccatgaagactctggctattcatt 739
Query: 541 ttagggtcacaattaacaaatcccaacatctaagaaagtatttccacagccccacctcac 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 740 ttagggtcacaattaacaaatcccaacatctatgaaagtatttccacagccccacctcac 799
Query: 601 atctttttcacc 612
||||||||||||
Sbjct: 800 atctttttcacc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space: 602602
Effective search space used: 602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_k24.g1 MSMg01no153_k24.g1 CHROMAT_FILE:
MSMg01no153_k24.g1 PHD_FILE: MSMg01no153_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:07 2005
(365 letters)
>mm_chr5_127156660_127157424
Length = 765
Score = 640 bits (331), Expect = 0.0
Identities = 340/343 (99%)
Strand = Plus / Minus
Query: 23 gttctatctctagggacactccagaacttctactgggatattggggctggaaactgttgc 82
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 765 gttctatctctagggacactccagaacttctactgggatataggggctggaaactgttgc 706
Query: 83 tgaggaggtctggaagctgctgctgacccattgcccttgcctcaggccaggtggcagggc 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tgaggaggtctggaagctgctgctgacccattgcccttgcctcaggccaggtggcagggc 646
Query: 143 agcttctgaggactggacttagacctcgcttcctgaactgcccatttgaagcctgtcatg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agcttctgaggactggacttagacctcgcttcctgaactgcccatttgaagcctgtcatg 586
Query: 203 gagtcagcttagccttctcattggcacatctgtgaattcccaggttctataaggaaggaa 262
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 585 gagtcagcttagccttctcattggcacatctgtgagttcccaggttctataaggaaggaa 526
Query: 263 tagattcggggtgtagatggggagtggggaggctcatgcaattaattaagtcttgatcaa 322
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 525 tagattcggggtgtagatggggagcggggaggctcatgcaattaattaagtcttgatcaa 466
Query: 323 atcgatgtgggatgatcataatctcaagatcgatccaggaggc 365
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atcgatgtgggatgatcataatctcaagatcgatccaggaggc 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
