Query= MSMg01no153_n09.b1 MSMg01no153_n09.b1 CHROMAT_FILE:
MSMg01no153_n09.b1 PHD_FILE: MSMg01no153_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:18 2005
(286 letters)
>mm_chr5_34006527_34007212
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Plus
Query: 1 agaccttgtctcagaaaaataacatggtagaagaggccaccagctgtcttctagtaacag 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccttgtctcagaaaaataacatagtagaagaggccaccagctgtcttctagtaacag 260
Query: 61 ggtgggatataacactaccgccatcccctagagctgcctcactgtctgggtttattttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgggatataacactaccgccatcccctagagctgcctcactgtctgggtttattttaa 320
Query: 121 ggagagagtggtggggctctccctcacccagaacctcactctacaaggtgatgatgactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagagagtggtggggctctccctcacccagaacctcactctacaaggtgatgatgactt 380
Query: 181 tctctctaggagggaatcttgacttcctcaagcctttcagcttccacaagtcttctggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctctaggagggaatcttgacttcctcaagcctttcagcttccacaagtcttctggac 440
Query: 241 agtgagctgttgacccctcctatcgagccagtgctggagccttccc 286
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgagctggtgacccctcctatcgagccagtgctggagccttccc 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no153_n09.g1 MSMg01no153_n09.g1 CHROMAT_FILE:
MSMg01no153_n09.g1 PHD_FILE: MSMg01no153_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:18 2005
(322 letters)
>mm_chr5_34160197_34160918
Length = 722
Score = 576 bits (298), Expect = e-169
Identities = 316/324 (97%), Gaps = 5/324 (1%)
Strand = Plus / Minus
Query: 1 gatgtggttaagaaccctcttctcacaagccctgactcagaggcctaaggtatctgtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatgtggttaagaaccctcttctcacaagccctgactcagaggcctaaggtatctgtcac 391
Query: 61 tggggtccagttgttacttccaggtacaaaccaccagcccagaacagctatagaccccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tggggtccagttgttacttccaggtacaaaccaccagcccagaacagctatagaccccat 331
Query: 121 ctttcaccaaggacactccctagggggataacccatcagagctcttgagacagccaacat 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 330 ctttcaccaaggacactccctagggtgataacccatcagagctcttgagacagccaacat 271
Query: 181 ccaacactgggtatcgttcagaaaaactacaccttcttccagctcttaggcgagagacta 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 270 ccaacactgggtatcgttcagaaaaactacaccttcttccagctcttaggtgagagacta 211
Query: 241 ctttttgttctaattt--aaaaaaaaaagatttattttattcttaacaggttatagcggt 298
|||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct: 210 ctttttgttctaatttttaaaaaaa---gatttattttattcttaataggttatagcggt 154
Query: 299 acatgccttcaaccccaacatttg 322
||||||||||||||||||||||||
Sbjct: 153 acatgccttcaaccccaacatttg 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
